Template-based Modeling Results for APBE_ECOLI

Submitted Primary Sequence

>Length 351
MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSFKTWMSPQFKSFLVSEKN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSFKTWMSPQFKSFLVSEKN
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEECCCCEEEEECCEEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCEEEEEECHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSFKTWMSPQFKSFLVSEKN
432110000000000000102333332324222101020201101020100022232012012201210210141012234310002013142221120132002001101300231211100000000200111133322311233101102220113101113322201012312200000010010000110030034220210000010100011231422102000221234432110002021200001011110021212100000014112113221000000011011000000001011132022003432010000023231011100320221123345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSFKTWMSPQFKSFLVSEKN
1	MUSTER	1vrmA	0.255	0.860	2.849	threading_1	--------------------------------QYYELRDFALGTSVRIVVSSQKIN--PRTIAEAILEDKRITYKFSFTDERSVVKKINDHPN-EWVEVDEETYSLIKAACAFAELTDGAFDPTVGRLLELWGFTGNYENLRVPSREEIEEALKHTGYKNVLFDDKNRVV-----KNGVKIDLGGIAKGYALDRARQIALSFENATGFVEAGGDVRIIGPKFGKYPWVIGVKDPRGDD--VIDYIYLKSGAVATSGDYERYFVVDGVRYHHILDPSTGYPA-RGVWSVTIIAEDATTADALSTAGFVAGKDWRKVVLDFPGAHLLIVLEGGA---IERSETFKLFERE---
2	SPARKS	1vrma	0.252	0.860	6.389	threading_2	--------------------------------QYYELRDFALGTSVRIVVSSQKI--NPRTIAEAILEDKRITYKFSFTDERSVVKKINDHPN-EWVEVDEETYSLIKAACAFAELTDGAFDPTVGRLLELWGFTGNYENLRVPSREEIEEALKHTGYKNVLFDDKNR-----VVKNGVKIDLGGIAKGYALDRARQIALSDENATGFVEAGGDVRIIGPKFGKYPWVIGVKDPR--GDDVIDYIYLKSGAVATSGDYERYFVVDGVRYHHILDPSTGYPA-RGVWSVTIIAEDATTADALSTAGFVAGKDWRKVVLDFPNAHLLIVLEGGA---IERSETFKLFERE---
3	PROSPECT2	1vrmA	0.255	0.860	5.223	threading_3	--------------------------------QYYELRDFALGTSVRIVVSSQKIN--PRTIAEAILEDKRITYKFSFTDERSVVKKINDHPN-EWVEVDEETYSLIKAACAFAELTDGAFDPTVGRLLELWGFTGNYENLRVPSREEIEEALKHTGYKNVLFDDKNRV-----VKNGVKIDLGGIAKGYALDRARQIASFDENATGFVEAGGDVRIIGPKFGKYPWVIGVKDPRGDD--VIDYIYLKSGAVATSGDYERYFVVDGVRYHHILDPSTGYPA-RGVWSVTIIAEDATTADALSTAGFVAGKDWRKVVLDFPNAHLLIVLEGGA---IERSETFKLF---ERE
4	PPA-I	1vrmA	0.252	0.860	4.373	threading_4	--------------------------------QYYELRDFALGTSVRIVVSSQK--INPRTIAEAILEDKRITYKFSFTDERSVVKKINDHPN-EWVEVDEETYSLIKAACAFAELTDGAFDPTVGRLLELWGFTGNYENLRVPSREEIEEALKHTGYKNVLFDDKNR-----VVKNGVKIDLGGIAKGYALDRARQIALSFENATGFVEAGGDVRIIGPKFGKYPWVIGVKDPRGDD--VIDYIYLKSGAVATSGDYERYFVVDGVRYHHILDPSTGYPA-RGVWSVTIIAEDATTADALSTAGFVAGKDWRKVVLDFPNGHLLIVLEGGA---IERSETFKLFERE---
5	HHPRED-l	2o18_A	1.000	0.846	9.923	threading_5	-------------------------------TEVTVLEGKT-GTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSAL-RFNDSQSLSPWPVSEA-ADIVTTSLRIGAKTDGA-DITVGPLVNLWGFGPEQQPVQIPSQEQIDA-KAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARL-EQEGISRYLVSVGGALNSRG-NGEGLPWRVAIQKPTDK----QAVVDINGHGISTSGSYRN-------RLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGL-VLGPEKAKEVVRREGLAVY-ITKEGDSFKTW-SPQFKSFLVSE--
6	HHPRED-g	2o18_A	1.000	0.846	8.216	threading_6	-------------------------------TEVTVLEGKT-GTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSAL-RFNDSQSLSPWPVSEA-ADIVTTSLRIGAKTDGA-DITVGPLVNLWGFGPEQQPVQIPSQEQIDA-KAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARL-EQEGISRYLVSVGGALNSRG-NGEGLPWRVAIQKPTDK----QAVVDINGHGISTSGSYRN-------RLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGL-VLGPEKAKEVVRREGLAVY-ITKEGDSFKTW-SPQFKSFLVSE--
7	SP3	1vrma	0.255	0.860	6.701	threading_7	--------------------------------QYYELRDFALGTSVRIVVSSQKI--NPRTIAEAILEDKRITYKFSFTDERSVVKKINDHPN-EWVEVDEETYSLIKAACAFAELTDGAFDPTVGRLLELWGFTGNYENLRVPSREEIEEALKHTGYKNVLFDDKNR-----VVKNGVKIDLGGIAKGYALDRARQIALSFENATGFVEAGGDVRIIGPKFGKYPWVIGVKDPRGDD--VIDYIYLKSGAVATSGDYERYFVVDGVRYHHILDPSTGYPA-RGVWSVTIIAEDATTADALSTAGFVAGKDWRKVVLDFPNAHLLIVLEGGA---IERSETFKLF---ERE
8	SAM-T99	1vrmA	0.250	0.855	7.212	threading_8	--------------------------------QYYELRDFALGTSVRIVVSSQ--KINPRTIAEAILEDKRITYKFSFTDERSVVKKINDHPN-EWVEVDEETYSLIKAACAFAELTDGAFDPTVGRLLELWGFTGNYENLRVPSREEIEEALKHTGYKNVLFDDKN-----RVVKNGVKIDLGGIAKGYALDRARQIALSFENATGFVEAGGDVRIIGPKFGKYPWVIGVKDPRGD--DVIDYIYLKSGAVATSGDYERYFVVDGVRYHHILDPSTGYPAR-GVWSVTIIAEDATTADALSTAGFVAG-KDWRKVVLDFGAHLLIVLEGGAIERSETFKLFER-------
9	MUSTER	2o18C	0.967	0.863	2.773	threading_9	-------------------------------TEVTVLEGKT-GTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSAL-RFNDSQSLSPWPVS-EAADIVTTSLRIGAKTDG-ADITVGPLVNLWGFGPEQQPVQIPSQEQIDA-KAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARL-EQEGISRYLVSVGGALNSRG-NGEGLPWRVAIQKPTVQ-----AVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGLV-LGPEKAKEVVRREGL-AVYITKEGDSFKT-WSPQFKSFLVSE--
10	SPARKS	2o18a	0.956	0.846	5.819	threading_10	-------------------------------TEVTVLEGK-TGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALRF-NDSQSLSPWPVS-EAADIVTTSLRIGAKTDG-ADITVGPLVNLWGFGPEQQPVQIPSQEQIDA-KAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLAR-LEQEGISRYLVSVGGALNSRG-NGEGLPWRVAIQKPTDKQ----AVVDINGHGISTSGSYRN-------RLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTG-LVLGPEKAKEVVRREGL-AVYITKEGDSFKT-WSPQFKSFLVSE--

Predicted Tertiary Structure


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TM-score=0.921 to 1vrmA TM-score=0.832 to native SCOP code=d.96.2.1	TM-score=0.924 to 1vrmA TM-score=0.831 to native SCOP code=d.96.2.1	TM-score=0.922 to 1vrmA TM-score=0.831 to native SCOP code=d.96.2.1	TM-score=0.921 to 1vrmA TM-score=0.833 to native SCOP code=d.96.2.1	TM-score=0.920 to 1vrmA TM-score=0.828 to native SCOP code=d.96.2.1

Experimental Structure

Download 2o18C

SCOP code=d.96.2.1