Template-based Modeling Results for AMPH_ECOLI

Submitted Primary Sequence

>Length 385
MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMKDTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMKDTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS
CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMKDTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS
4321101000000000111322222222310120022002200322201000000022211002000002233424232300000000021000100010132120313220120002013222232230000000100020122220111222222232132003101213130210210000000010000000201322022001220021011310111122310221111232221121110100010000001000200100022321332210120211112213123221231213120000000011244122000021000100000000002310000000022222213100200120002012322222335
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMKDTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS
1	SPARKS	3o3va	0.176	0.855	5.395	threading_1	--------------------------------ERLSTLIHQRMQEAKVPALSVSVTIKGVRQRFVYGVADVASQKANTLDTVYELGSMSKAFTGLVVQILIQEGRLRQGDDIITYLPEMRLNYQGKPASLTVADFLYHTSGLPFSTLARLE-----NPMPGSAVAQQLRNENLLFAPGAKFSYASANYDVLGAVIENVTGKTFTEVIAERLTQPLGMSATVAVKGDEIIVNKASGYKLGFHAPLARNHVPAAYIHSTLPDMEIWIDAWLHRKALPATLREAMSNS------WRGNSDVPLAADNRILYASGWFID---QNQGPYISHGGQNPNFSSCIALRPDQQIGIVALANMNS----NLILQLCADIDNYLRIGKY------
2	PROSPECT2	2qz6A	0.201	0.852	4.473	threading_2	-----------------------------DIRQVVDSTVEPLMQQQDIAGLSVAVIQNGKAQYFNYGVANKDSKQPITENTLFEIGSVSKTFTATLAGYALANGKLKLSDPASQYLPAL---RGDKFDHISLLNLGTYTAGGLPL------------QFPTGKMISYYQHWKPAFAPGTQRLYSNPSIGLFGHLAAQSLGQPFEKLMEQTVLPKLGLKHTFISVPETQMSLYAQGYDKAVRVSPGALDAEAYGIKTSTSDLIHYVEVNMHPAKLEKPLQQAIAATHTYPIKVDALVEGNSTQMAMEPHKVNWLTPPQAAPLDTLVNKTGSTGGFGAYVAYVPSKGLGVVILANKNYP--NAERVKAAHAILSAM-----------
3	PPA-I	3o3vA	0.176	0.855	4.405	threading_3	--------------------------------ERLSTLIHQRMQEAKVPALSVSVTIKGVRQRFVYGVADVASQKANTLDTVYELGSMSKAFTGLVVQILIQEGRLRQGDDIITYLPEMRLNYQGKPASLTVADFLYHTSGLPFSTLARLENPMPGSA-----VAQQLRNENLLFAPGAKFSYASANYDVLGAVIENVTGKTFTEVIAERLTQPLGMSATVAVKGDEIIVNKASGYKLGFHAPLARNHVPAAYIHSTLPDMEIWIDAWLHRKALPATLREAMSNSWR------GNSDVPLAADNRILYASGWFID---QNQGPYISHGGQNPNFSSCIALRPDQQIGIVALANMNS----NLILQLCADIDNYLRIGKY------
4	HHPRED-l	3rju_A	0.628	0.873	3.997	threading_4	-------------------------SNALLTSQIVDQYAEHIFYNSGAVG-ALVVIDNNQVVNRSFGETQPGNNIRPRPDSLIRIASITKL-TSEI-VKLADDGIVKLTDPLKKYAPKGVNVPSSAKQPIRLLHLASHTSGLPREQPGGPQKRPVFTWPTKDNRWQWLKLAKVTVPPGVKAAYSNLAYDLLADALSRAAGKPYAHLLRDKITAPLG-KNTTLTPTAEQCKRL-IGVGS-SRCGNTVAAAGSGGIYSTPED-QHW-QQFLASDNSAPKRSAKREQALYFQRGDLVSLKG-DVAGQADALGLGWVY-APKADLPGI-QKTGGGGGFITY---VPEKNIGVFVVVTRSQLTKFSN-SDGVNQLVAELVK---------
5	HHPRED-g	2ffy_A	0.229	0.873	4.016	threading_5	--------------------------APQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPEL---TAKQWNGITLLHLATYTAGGLPQVPDEV--------KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAYGVKSTIEDMARWVQSNLKPLDINEKTLIQLAQSRYWQTGDMYQGLGWEMPVNPDSIINGSDAPPTPAVRASWVHKTGATGGFGSYVAFIPEKELGIVMLANKNYPNP--ARVDAAWQILNALQ----------
6	SP3	3o3va	0.182	0.855	5.498	threading_6	--------------------------------ERLSTLIHQRMQEAKVPALSVSVTIKGVRQRFVYGVADVASQKANTLDTVYELGSMSKAFTGLVVQILIQEGRLRQGDDIITYLPEMRLNYQGKPASLTVADFLYHTSGLPFS-----TLARLENPMPGSAVAQQLRNENLLFAPGAKFSYASANYDVLGAVIENVTGKTFTEVIAERLTQPLGMSATVAVKGDEIIVNKASGYKKPVLFHAPLARNHAAYIHSTLPDMEIWIDAWLHRKALPATLREAMSNSW------RGNSDVPLAADNRILYASGWFID---QNQGPYISHGGQNPNFSSCIALRPDQQIGIVALANMNSNLILQ----LCADIDNYLRIGKY------
7	SAM-T99	2qmiA1	0.182	0.857	4.351	threading_7	--------------------------------GKLESFIVEKMAERKVPGISISIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKL---RPFGEPVTVHHLLTHSSGIPSLGYAMVGGDNWLPVSTPEETIAFARDMEAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEVEKDKDVAMGYKEGVPQPFPYGITADGGLLSSVLDLAKYLKMYIER----DESIVSKEYIEKMETSYIKV---PWEIFGGEGYGYGLIIYPN-FLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGK------------
8	SPARKS	3ozha	0.567	0.875	4.948	threading_8	-------------------------SNALLTSQIVDQYAEHIFYNSGAVG-ALVVIDNNQVVNRSFGETQPGNNIRPRPDSLIRIASITKLTSEIV--KLADDGIVKLTDPLKKYAPKGVNVPSYAKQPIRLLHLASHTSGLPREQPGGPQKRPVFTWPTKDNRWQWLKLAKVTVPPGVKAAYSNLAYDLLADALSRAAGKPYAHLLRDKITAPLGKNTTLTPTAEQCKRLIGVGS---SRCGNTVAAAGSGGIYSTPEDQH-WQQFLASDNSAPKRSAKRE-QALYFQRGDLVSLKG-DVAGQADALGLGWV--YAPKADLPGIQKTGGGGGFITYA--VPEKNIGVFVVVTRSQLTKFSN-SDGVNQLVAELVK---------
9	PROSPECT2	2wzxA	0.191	0.886	4.415	threading_9	------------------------EAPADRLKALVDAAVQPVMKANDIPGLAVAISLKGEPHYFSYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQHWPAL---QGSRFDGISLLDLATYTAGGLPLQFPD------SVQKDQAQIRDYYRQWQPTYAPGSQRLYSNPSIGLFGYLAARSLGQPFERLMEQQVFPALGLEQTHLDVPEAALAQYAQGYGRPLRVGPGPLDAEGYGVKTSAADLLRFVDANLHPERLDRPWAQALDAGLGWEAYDWPISLKRLQAGNSQPHRIARLPAPQALEGQRLLNKTGSTNGFGAYVAFVPGRDLGLVILANRNYP--NAERVKIAYAILSGLE---------Q
10	PPA-I	2zc7A	0.184	0.875	4.285	threading_10	------------------------PMSEKQLAEVVERTVTPLMKAQAIPGMAVAVIYEGQPHYFTFGKADVAANKPVTPQTLFELGSISKTFTGVLGGDAIARGEISLGDPVTKYWPELT---GKQWQGIRMLDLATYTAGGLP-------LQVPDEVKDNASLLRFYQNWQPQWKPGTTRLYANASIGLFGALAVKPSGMSYEQAITTRVFKPLKLDHTWINVPKAEEAHYAWGYRDGKAVHVSPGMLEAYGVKTNVQDMASWVMVNMKPDSLQDNSLRKGLTLAQWRVGAMYQGLGWEMLNWPVDLPAREVNPPAPPVNASWVHKTGSTGGFGSYVAFIPEKQLGIVMLANKSYPNARVEAAYRILSAL--------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.794 to 1ei5A SCOP code=b.61.3.1	TM-score=0.797 to 1ei5A SCOP code=b.61.3.1	TM-score=0.730 to 2efxA SCOP code=e.3.1.1	TM-score=0.792 to 1ei5A SCOP code=b.61.3.1	TM-score=0.774 to 1cefA SCOP code=e.3.1.1