Template-based Modeling Results for AMIB_ECOLI

Submitted Primary Sequence

>Length 445
MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLEQHEKQSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLEQHEKQSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN
CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEECCCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLEQHEKQSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN
2021010000000000000001010210001223310000010223130100122430000002402123222222223210100111224332100000202432311102122122110001121322222222222133132322223422321332132323422222223222322242223223200000000010312101022112101000100220120034232120000132121020200020044230100000001112242020010000134423230011022122102211122222122321320020011111021231012002100210231132232201111000022140000001001011321131011330022002000200120033222322232222322222222442238
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLEQHEKQSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN
1	MUSTER	3ne8A	0.323	0.494	1.834	threading_1	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDGLPK-----------EDILLDLTRRETHAFSINFANNVVSNLSKSINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNN-PQWRKQAASIAYSIRQFAEYRQPL-----------------------
2	SPARKS	3ne8a	0.318	0.501	4.801	threading_2	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDGLP-----------KEDILLDLTRRETHAFSINFANNVVSNLSKSHNLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQA-ASIAYSIRQFAEYRQKIQPL--------------------
3	PROSPECT2	3ne8A	0.323	0.501	3.429	threading_3	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEASD-AIAKSLAESENKVDLLDGLP-----------KEDILLDLTRRETHAFSINFANNVVSNLSKSINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQAA-SIAYSIRQFAEYRQKIQ--------------------PL
4	PPA-I	3ne8A	0.323	0.501	2.807	threading_4	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDGLPKED-----------ILLDLTRRETHAFSINFANNVVSNLSKSHNLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQAASIAYSIRQFAEYRQKIQPL---------------------
5	HHPRED-l	3ne8_A	0.323	0.501	6.821	threading_5	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEA-SDAIAKSLAESENKVDLLDGL-----PKE------DILLDLTRRETHAFSINFANNVVSNLKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQ-AASIAYSIRQFAEYRQKI-QPL-------------------
6	HHPRED-g	3ne8_A	0.323	0.501	6.253	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEASDAI-AKSLAESENKVDLLDGL-----PKE------DILLDLTRRETHAFSINFANNVVSNLKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQ-AASIAYSIRQFAEYRQKI-QPL-------------------
7	SP3	3ne8a	0.323	0.494	5.288	threading_7	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDGLP-----------KEDILLDLTRRETHAFSINFANNVVSNLSKSHNLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQA-ASIAYSIRQFAEYIQPL-----------------------
8	SAM-T99	3ne8A	0.338	0.479	7.902	threading_8	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDGLPK-----------EDILLDLTRRETHAFSINFANNVVSNLKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQ-AASIAYSIRQF------------------------------
9	MUSTER	1jwqA	0.309	0.400	1.398	threading_9	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVVVIDAGHGAKDSGAVGISKNYEKTFNLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQRSA---------------------------------------------------SKAFANVMHKYFAPATGLTDRGIRYGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDVK--------------------------
10	SPARKS	1jwqa	0.309	0.400	2.927	threading_10	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVVVIDAGHGAKDSGAVGISRNYEKTFNLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQR---------------------------------------------------SASKAFANVMHKYFAPATGLTDRGIRYGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDVK--------------------------

Predicted Tertiary Structure


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TM-score=0.640 to 1jwqA SCOP code=c.56.5.6	TM-score=0.639 to 1jwqA SCOP code=c.56.5.6	TM-score=0.641 to 1jwqA SCOP code=c.56.5.6	TM-score=0.641 to 1jwqA SCOP code=c.56.5.6	TM-score=0.639 to 1jwqA SCOP code=c.56.5.6