Template-based Modeling Results for AMIA_ECOLI

Submitted Primary Sequence

>Length 289
MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDELLKTSNGHSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMAKYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKLHSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYFHWFDNQKAHSKKR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDELLKTSNGHSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMAKYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKLHSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYFHWFDNQKAHSKKR
CCCCCCCCCCCCCCEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDELLKTSNGHSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMAKYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKLHSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYFHWFDNQKAHSKKR
5542312422223220141110111112223222333223223232324244222210000000010211000033112101000100210121044320101001222220202200200342101000000011122240200000001242222200210022222012222332233232012001111222113101200220032023224232221331100002213000000100101123113101222012200200020012002213433242444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDELLKTSNGHSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMAKYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKLHSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYFHWFDNQKAHSKKR
1	MUSTER	3ne8A	0.378	0.768	2.804	threading_1	------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDGLPKED-------ILLDLTRRETHAFSINFANNVVSNLSKSINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNN-PQWRKQAASIAYSIRQFAEYRQKIQPL----
2	SPARKS	3ne8a	0.378	0.768	5.450	threading_2	------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDGLPKED-------ILLDLTRRETHAFSINFANNVVSNLSKSHNLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQA-ASIAYSIRQFAEYRQKIQPL----
3	PROSPECT2	3ne8A	0.378	0.768	4.188	threading_3	------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDGLPKED-------ILLDLTRRETHAFSINFANNVVSNLSKSINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQAA-SIAYSIRQFAEYRQKI----QPL
4	PPA-I	3ne8A	0.374	0.768	3.879	threading_4	------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDGLPKED-------ILLDLTRRETHAFSINFANNVVSNLSKSINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQAASIAYSIRQFAEYRQKIQPL-----
5	HHPRED-l	3ne8_A	0.378	0.768	6.561	threading_5	------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDG-LPKE------DILLDLTRRETHAFSINFANNVVSNLKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQ-AASIAYSIRQFAEYRQKI-QPL---
6	HHPRED-g	3ne8_A	0.365	0.768	6.373	threading_6	------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEASDA-IAKSLAESENKVDLLDG-LPKE------DILLDLTRRETHAFSINFANNVVSNLKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQ-AASIAYSIRQFAEYRQKI-QPL---
7	SP3	3ne8a	0.369	0.768	5.634	threading_7	------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDGLP-------KEDILLDLTRRETHAFSINFANNVVSNLSKSINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQA-ASIAYSIRQFAEYRQKIQPL----
8	SAM-T99	3ne8A	0.396	0.734	8.619	threading_8	------------------------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDE-ASDAIAKSLAESENKVDLLDG-------LPKEDILLDLTRRETHAFSINFANNVVSNLKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQ-AASIAYSIRQF--------------
9	MUSTER	1jwqA	0.333	0.612	2.142	threading_9	-------------------------------------------------------MKVVVIDAGHGAKDSGAVGISKNYEKTFNLAMALKVESILKQPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQRSA-----------------------------------------------SKAFANVMHKYFAPATGLTDRGIRYGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDVK----------
10	SPARKS	1jwqa	0.333	0.612	3.292	threading_10	-------------------------------------------------------MKVVVIDAGHGAKDSGAVGISRNYEKTFNLAMALKVESILKQPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQR-----------------------------------------------SASKAFANVMHKYFAPATGLTDRGIRYGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDVK----------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.735 to 1jwqA SCOP code=c.56.5.6	TM-score=0.734 to 1jwqA SCOP code=c.56.5.6	TM-score=0.734 to 1jwqA SCOP code=c.56.5.6	TM-score=0.735 to 1jwqA SCOP code=c.56.5.6	TM-score=0.734 to 1jwqA SCOP code=c.56.5.6