Template-based Modeling Results for ALSK_ECOLI

Submitted Primary Sequence

>Length 309
MQKQHNVVAGVDMGATHIRFCLRTAEGETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQLSWDVVENRLTQQLVLAAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCACGNPGCLETNCSGMALRRWYEQQPRNYPLRDLFVHAENAPFVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLPQFCAKAP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQKQHNVVAGVDMGATHIRFCLRTAEGETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQLSWDVVENRLTQQLVLAAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCACGNPGCLETNCSGMALRRWYEQQPRNYPLRDLFVHAENAPFVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLPQFCAKAP
CCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEECCEEEECCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQKQHNVVAGVDMGATHIRFCLRTAEGETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQLSWDVVENRLTQQLVLAAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCACGNPGCLETNCSGMALRRWYEQQPRNYPLRDLFVHAENAPFVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLPQFCAKAP
554432000000001020200011231200111212124221300020002002201431422010000000111133310000011011210321300210141030100011000000001003222222000000000000000001000010010000100000012113202001200000001020012102322531203100221341300210021002000000100001000000000201200130012002310232122320200102022100000000000230022112314
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQKQHNVVAGVDMGATHIRFCLRTAEGETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQLSWDVVENRLTQQLVLAAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCACGNPGCLETNCSGMALRRWYEQQPRNYPLRDLFVHAENAPFVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLPQFCAKAP
1	MUSTER	2aa4A	0.198	0.916	2.975	threading_1	M-----TTLAIDIGGTKLAAALIGADGQIRDRRELPTPSQTPEALRDALSALVSPLQAHAQ----RVAIASTGIIRDGSLLALNPHNLG--GLLHFPLVKTLEQLTNLPTIAINDAQAAAWAEFQALDGDITDMVFITVSTGVGGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASGRGIAAAAQGELAGADAKTIFTRAGQGQLIHRSARTLARLIADIKATTDCQCVVVGGSVGLAEG-YLALVETYLAQE----PAAFHVDLLAAHYRHDAGLLGAALLAQGE----------
2	SPARKS	3vgka	0.272	0.929	5.372	threading_2	------LTIGVDIGGTKIAAGVVDEEGRILSTFKVATPPTA-EGIVDAICAAVAGASE--GHDVEAVGIGAAGYVDDKRATVLFAPNIDWR---HEPLKDKVEQRVGLPVVVENDANAAAWGEYRGAGQGHDDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCWEQYASGRALVRYAKQRADGIEGKHISEAARQGDSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLARQG----------
3	PROSPECT2	2qm1A	0.253	0.961	4.735	threading_3	-SNADKKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNLEDGKHIVPSIIESIRHRIDLYNKEDFVGIGGTPGSVDIEKGTVVGAYNLNW--TTVQPVKEQIESALGIPFALDNDANVAALGERWGAGENNPDVIFITLGTGVGGGIVAAGKLLHGVAGCAGEVGHVTVDPNGFDCTCGKRGCLETVSSATGVVRVARHLSEDVSSKDVFEFAEKGDVVDRVCFYLGLATGNLGNTLNPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQV-RNSTKIKLAELGNEAGVIGAASLALQF--------SK
4	PPA-I	2aa4A	0.194	0.919	4.548	threading_4	-----MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQT---PEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLG--GLLHFPLVKTLEQLTNLPTIAINDAQAAAWAEFQALDGDITDMVFITVSTGVGGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASGRGIAAAAQGELAGADAKTIFTRAGQGQLIHRSARTLARLIADIKATTDCQCVVVGGSVGLAEG-YLALVETYLAQE----PAAFHVDLLAAHYRHDAGLLGAALLAQGE----------
5	HHPRED-l	1z05_A	0.205	0.981	3.596	threading_5	TNNLGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQTYAARVTSIAITLPGLVNSEQGIVLQMPHY---NVKNLALGPEIYKATGLPVFVANDTRAWALEKLFGHSQDVDNSVLISIHHGLGAGIVLDGRVLQGRHGNIGELGHIQIDPQGKRCHCGNYGCLETVASSQAIRDQVTARIEDICAAAADGDPLAVDVIQQLGRYLGAAIAIVINLFNPEKILIGGVINQAKSILYPSIEQCIREQSLPV-YHQDLKLVESRFYKQATMPGAALIK-QALYDGLLMKV-
6	HHPRED-g	3htv_A	0.974	0.861	3.135	threading_6	--KQHNVVAGVD-GATHIRFCLRTAEGETLHCEKKRTAEVIAPGLVSGIGE-IDEQLRRFNARCHGLV-GFPALVSKDKRTIISTPNLP--LTDLYDLADKLENTLNCPVEFSRDVNLQLSWDVVNRLTQ-QLVLAAYLGTG-GFAVW-NGAPWTGAHGVAGE---------------------ETNCSG-ALRRWYEQQPRNYPLRDLFVHAENAPFVQSLLENAARAIATSINLFDPDAVILGGGV---PAFPRETLVA-TQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLP-------
7	SP3	3vgka	0.272	0.929	5.026	threading_7	------LTIGVDIGGTKIAAGVVDEEGRILSTFKVATPPTA-EGIVDAICAAVAGASE--GHDVEAVGIGAAGYVDDKRATVLFAPNIDWR---HEPLKDKVEQRVGLPVVVENDANAAAWGEYRGAGQGHDDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCWEQYASGRALVRYAKQRADGIEGKHISEAARQGDSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLARQG----------
8	SAM-T99	3vgkA	0.281	0.922	4.229	threading_8	------LTIGVDIGGTKIAAGVVDEEGRILSTFKVATP-PTAEGIVDAICAAVAGASEGHD--VEAVGIGAAGYVDDKRATVLFAPNI---DWRHEPLKDKVEQRVGLPVVVENDANAAAWGEYRFGGQGHDDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCWEQYASGRALVRYAKQRD-GIEGKHISEAAQGDPSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLARQ-----------
9	MUSTER	2ap1A	0.233	0.932	2.961	threading_9	----NAMYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFLDAVCELVEEADQRFGVK-GSVGIGIPGMPETEDGTLYAANV---PAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDEFTQYPLVMGLILGTGVGGGLVLNGKPITGQSYITGEFGHMRLPVDARRCGCGQMGCIENYLSGRGFAWLYQHYYDSLQAPEIIALWEQGAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLSNF-TAITTQLAERLPRHLLPV--ARAPRIERARHGDAGGMRGAAFLHLTD----------
10	SPARKS	1z05a	0.207	0.987	4.715	threading_10	TNNLGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQTYAAQVTSIAITLPGLVNSEQGIVLQMPHYNVK---NLALGPEIYKATGLPVFVANDTRAWALAEKLGHSQDVDNSVLISIHHGLGAGIVLDGRVLQGRHGNIGELGHIQIDPQGKRCHCGNYGCLETVASSQAIRDQVTARIQEISIEDICAAAADGDVIQQLGRYLGAAIAIVINLFNPEKILIGGVINQAKSILYPSIEQCIREQSL-PVYHQDLKLVESRFYKQATMPGAALIKQALYDGLLLMKVV

Predicted Tertiary Structure


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TM-score=0.939 to 2aa4A TM-score=0.805 to native SCOP code=c.55.1.10	TM-score=0.844 to 2aa4A TM-score=0.823 to native SCOP code=c.55.1.10	TM-score=0.859 to 2aa4A TM-score=0.807 to native SCOP code=c.55.1.10	TM-score=0.840 to 2ap1A TM-score=0.834 to native SCOP code=c.55.1.10	TM-score=0.945 to 2aa4A TM-score=0.804 to native SCOP code=c.55.1.10

Experimental Structure

Download 3htvA

SCOP code=c.55.1.10