Template-based Modeling Results for AGAR_ECOLI

Submitted Primary Sequence

>Length 269
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCCEECHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEEEEECHHHCCEEEECCCCCHHHHHHHHHCCCEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
54333232343221222013200220352220203200321111121022002102521100101100001322222222213212211121130002001310431110001000001100210352320000000010011014132010000102013322001032012003202000000001001132100122221020122002102200000121312220001001033010000132022300200451211001125
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
1	SPARKS	2w48a	0.159	0.862	1.244	threading_1	------------SDDIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGIVT-------IAINYDYNENLWLEQQLKQKEEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAARDSLDVALVGGSPAIRDGAFYGSEESDDLNARHV-AGDICSRFYDINGGLVDTNMSELSIEMAKLRQARYSIGIAGEEK--YSGILGALHGRYINCLVTN----RETAELLLK----------
2	PROSPECT2	2w48A	0.127	0.933	1.713	threading_2	SD-------------DIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINY---DYNENLWLEQQLKQKFGLEEEQLSAMGQHGARLLEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAARLKAESHLADFPALLDNPLMQSQHFKTISSYWDLDVALVGIGSPAIRDGANWHAFYGSEESDDLNA--RHVAGDIGLVDTNMSEKTLSIEMAKARYSIMGEEKYSGILGALHGRYINCLVTNK
3	SP3	2w48a	0.119	0.937	1.005	threading_3	------------SDDIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGIVTAINY----DYNENLWLEQQLKQKFGLKEEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAARLKAESHLADFPALLDNNGIMQQHFKTISSYWSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARCSRFYGLVDTNMSEKTLSIEMAKLRQARYSIGGEEKYSGILGALHGRYINCLVTNR
4	PPA-I	3enwA	0.148	0.576	1.411	threading_4	---------------------------------------------------------------------------------------TQDEMKKAAGWAALKYVEKGSIVGVGTGSTVNHFIDALGTMSEKGAVSSSVASTEKLEAL--------GIKIFDCNE------------VASLDIYVDGADEINADREMIKGGGAALTREKIVAAIADKFICIVDGTKAVDV-------LGTFPLPVEVIPMASYVARQLVKLGGDPCYREG
5	SAM-T99	1i1gA1	0.235	0.190	1.314	threading_5	--------------IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGII------------------------------------------------------------------------------------------------------------------------------------EGYT------------------------------------------------------------------------
6	HHPRED-l	3rrl_B	0.156	0.621	3.542	threading_6	--------------------------------------------------------------------------------------------REAIIKRAAKELKEG-YVNLGIGLPT-LVANEVS-G-NIVFQSENGLLGYPLEGSVDADLINAGKEVVPGASFFNSADSFA-IRGGHIDLAILGG-EVSQNGDLANW-IPKKLIK-DLVHGAKKVIVI-EHCNKGESKVKKECSLGVVHQLITDLAVFEFSNQVKEKTEAEFEVRL-
7	SPARKS	1vb5a	0.179	0.810	1.015	threading_7	--------------LPERVLEILREMKREAKKGAEAFLTLAELDESLLEDAIMELREEYNLARF----IPVTNRRDILKSRALEFLRRMEEAKRELASIGAQLIDDGDVIITSFSSTVLEIIRTAKERKRFKVILEGLHLARELEFS-GIEFEVI---------------TDAQMGLFEASIAIVGADMITKDGYVVNKA-GTYLLALACHENAIPFYVAAETYKFHPTLLFDVTPWKYVRGIITELGIPRDI----------------
8	HHPRED-g	3rrl_B	0.170	0.613	3.291	threading_8	--------------------------------------------------------------------------------------------REAIIKRAAKELKEG-YVNLGIGLPT-LVANEVS-G-NIVFQSENGLLGYPLEGSVDADLINAGKEVVPGASFFNSADSFA-IRGGHIDLAILGG-EVSQNGDLANW-IPKKLIK-DLVHGAKKVIVI-EHCNKGESKVKKECSLGVVHQLITDLAVSLDQVKEKTEAEFEVRL---
9	MUSTER	2w48B	0.127	0.877	0.776	threading_9	-----------NSDDIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGILKQKFG-AVVASSDGLL-----------EEEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAAR-------LKAESHLDFPALLDLIRNGIMQS-SLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARCSRFYDLVDTNMSEKTLSIEMAKLRQARYSIG-EEKYSGILGALHGRYINCLVTNR
10	SP3	1ks2a1	0.216	0.498	1.115	threading_10	---------------------------------------------------------------------------------------TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTGQIEGAVSSSDASTEKLKSL--------GIHVFD-------------LNEVSLGIYVDGADEINGH--QIKGGGAALTREKIIASVAEKFICIADASKQ-------------VDIL-ANRGAD-----------VALIGTPD

Predicted Tertiary Structure


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TM-score=0.591 to 2gnpA SCOP code=c.124.1.8	TM-score=0.645 to 2gnpA SCOP code=c.124.1.8	TM-score=0.647 to 2gnpA SCOP code=c.124.1.8	TM-score=0.610 to 1m0sA SCOP code=c.124.1.4	TM-score=0.477 to 1i1gA SCOP code=a.4.5.32