Template-based Modeling Results for ABGB_ECOLI

Submitted Primary Sequence

>Length 481
MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGNIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGVFDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSYLPNRTLENAMYQALSHFGTPEWNSEELAFAKQIQATLTSNDRQNSLNNIAATGGENGKVFALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTVNLFLDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSPLK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGNIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGVFDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSYLPNRTLENAMYQALSHFGTPEWNSEELAFAKQIQATLTSNDRQNSLNNIAATGGENGKVFALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTVNLFLDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSPLK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCEECCCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGNIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGVFDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSYLPNRTLENAMYQALSHFGTPEWNSEELAFAKQIQATLTSNDRQNSLNNIAATGGENGKVFALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTVNLFLDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSPLK
4540132023003302420020022015001121321100210020033120202110140100000211424200000011100010122122232222221320000000000000000010023012322230100000010222230111003200033000000001202101010210000000010201000002012202000000000010020014112341100000011112121101120101000102222003201210130020003114020102012202111113201200020023102132223001002201320123323211111112113313111121231111330011111111211112101000100000000000121011102200210302201300010010000000200122200330132024224322120101432222324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGNIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGVFDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSYLPNRTLENAMYQALSHFGTPEWNSEELAFAKQIQATLTSNDRQNSLNNIAATGGENGKVFALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTVNLFLDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSPLK
1	MUSTER	3ramA	0.288	0.788	2.650	threading_1	--GEKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFIATYDLDGPAIGFLAEYDALPGL-----------------GHACGHNIIGTASVLGAIGLKQVIDQ--IGGKVVVLGCPAEEGGSAKASYVKAGVIDQID-IALIHPG-NETYKTIDTLAVDVLDVKFYGKSAHASENADEALNALDA-ISYFNGVAQLRQHIKKDQRVHGVIL-DGGKAANIIPDYTHARFYTRAT-RKELDILTEKVNQIARGAAIQTGCDYEFGPQNGVNEFIKTPKLDDLFAKYAEEVGEAVIDDD--------------------------------------------------------FGYGSTDTGNVSHVVPTIHPHIKIGSRNLVGHTHRFREAAASVHGDEALIKGAKIA--LGLELITNQDVYQDIIEEHAHLKG------------------
2	SPARKS	3rama	0.257	0.784	6.218	threading_2	--GEKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGTGFIATYDSGLDGPAIGFLAEYDALP-----------------GLGHACGHNIIGTASVLGAIGLKQVID--QIGGKVVVLGCPAEEGGSAKASYVKAGVIDQIDIAL-IHPG-NETYKTIDTLAVDVLDVKFYGKSAHASENADEALN----ALDAISYFNGVAQLHIKKDQRVHGVILDGGKAANIIPDYTHARFYTRAT-RKELDILTEKVNQIARGAAIQTGCDYEFGIQNGVNEFIKTPKLDDLFAKYAEEVGEAVIDDD--------------------------------------------------------FGYGSTDTGNVSHVVPTIHPHIKIGSRNLVGHTHRFREAAASVHGDEALIKGAKIA--LGLELITNQDVYQDIIEEHAHLKG------------------
3	PROSPECT2	3ramA	0.296	0.788	4.358	threading_3	--GEKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFIATYGLDGPAIGFLAEYDALPG-----------------LGHACGHNIIGTASVLGAIGLKQVIDQ--IGGKVVVLGCPAEEGGSAKASYVKAGVIDQIDIAL-IHPG-NETYKTIDTLAVDVLDVKFYGKSAHASENADEALNALDAI-SYFNGVAQLRQHIKKDQRVHGVILD-GGKAANIIPDYTHARFYTRAT-RKELDILTEKVNQIARGAAIQTGCDYEFGPQNGVNEFIKTPKLDDLFAKYAEEVGEAVID--------------------------------------------------------DDFGYGSTDTGNVSHVVPTIHPHIKIGSRNLVGHTHRFREAAASVHGDEALIKGAKIA--LGLELITNQDVYQDIIEEHAHLKG------------------
4	PPA-I	3ramA	0.290	0.788	4.533	threading_4	--GEKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFIATYDSDGPAIGFLAEYDALPGL-----------------GHACGHNIIGTASVLGAIGLKQVIDQ--IGGKVVVLGCPAEEGGSAKASYVKAGVIDQID-IALIHPG-NETYKTIDTLAVDVLDVKFYGKSAHASENADEALNALDA-ISYFNGVAQLRQHIKKDQRVHGVILD-GGKAANIIPDYTHARFYTRAT-RKELDILTEKVNQIARGAAIQTGCDYEFGPQNGVNEFIKTPKLDDLFAKYAEEVGEAVI--------------------------------------------------------DDDFGYGSTDTGNVSHVVPTIHPHIKIGSRNLVGHTHRFREAAASVHGDEALIKGAKIA--LGLELITNQDVYQDIIEEHAHLKG------------------
5	HHPRED-l	1xmb_A	0.177	0.740	4.486	threading_5	------KLLEFAKEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVA--ITGVIGYIGTGPPFVALRADMDALPI-QEGVEWEHKSK--IAGKMHACGHDGHVTMLLGAAKILHEH--RHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGGSFLAGAGVFEAVITGK----------TIDPVVAASSIVLSLQQLVSTDPLDSKVVTVSKVN--------PDSITIGGTLRAFTGFT--QLQQRVKEVITKQAAVHRCNASVNLTEPMPPTVNNKDLYKQFKKVVRDLGQEA------------------------------------------------------F-VEAAPVMGSEDFSYFAETIPGHFSLLGMQDETASSHSPLY------RINEDVLPYGAAIHASMAVQYLKEKAS-------------------------------
6	HHPRED-g	1xmb_A	0.178	0.746	4.704	threading_6	------KLLEFAKEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAI--TGVIGYIGTGEPFVALRADMDALPI--QEGVEWEHKSKIAGKM-HACGHDGHVTMLLGAAKILHEH--RHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHARIPFGKAASRAGSAGVFEAVITGK----------TIDPVVAASSIVLSLQQLVSRETDPSKVVTVSKVN--------PDSITIGGTLRAFTGF--TQLQQRVKEVITKQAAVHRCNASVNLTEPMPPTVNNKDLYKQFKKVVRDLGQEAFVEA-APVMGSEDFSYFAETIPGHFSLLGMQDETNG-YASSHSPLYRINED--------------------------------------------------------VLPYGAAIHASMAVQYLKEKAS-------------------------------
7	SP3	3rama	0.257	0.784	6.784	threading_7	--GEKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGTGFIATYDSGLDGPAIGFLAEYDALP-----------------GLGHACGHNIIGTASVLGAIGLKQVI--DQIGGKVVVLGCPAEEGGSAKASYVKAGVIDQID-IALIHPG-NETYKTIDTLAVDVLDVKFYGKSAHASENADEALNAL----DAISYFNGVAQLRIKKDQRVHGVILDGGKAANIIPDYTHARFYTRAT-RKELDILTEKVNQIARGAAIQTGCDYEFGIQNGVNEFIKTPKLDDLFAKYAEEVGEAVI------------------------------------------------DDDFGYGS--------TDTGNVSHVVPTIHPHIKIGSRNLVGHTHRFREAAASVHGDEALIKGAKIA--LGLELITNQDVYQDIIEEHAHLKG------------------
8	SAM-T99	3ramA	0.292	0.784	6.761	threading_8	----KQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFIATYDSGGPAIGFLAEYDALP-----------------GLGHACGHNIIGTASVLGAIGLKQVIDQ--IGGKVVVLGCPAEEGGSAKASYVKAGVIDQIDIAL-IHPGNETYK-TIDTLAVDVLDVKFYGKSAHASENADEALNALDA-ISYFNGVAQLRQHIKKDQRVHGVIL-DGGKAANIIPDYTHARFYTRA-TRKELDILTEKVNQIARGAAIQTGCDYEFGIQNGVNEFIKTPKLDDLFAKYAEEVGEAVIDDD--------------------------------------------------------FGYGSTDTGNVSHVVPTIHPHIKIGSRNLVGHTHRFREAAASVHGDEALIKGAKIA--LGLELITNQDVYQDIIEEHAHLKG------------------
9	MUSTER	2q43A	0.185	0.740	1.983	threading_9	--KLLEFAKS--PEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVIGYIGTGEP-PFVALRADMDALPI--QEGVEWEHKSKIAG-KMHACGHDGHVTMLLGAAKILHEHRH--HLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHARIPFGKAASRAGSFLAGAGVFEAV---------KTIDPVVAASSIVLSLQQLVSRETDPSKVVTVSK--------VNPDSITIGGTLRAFTG--FTQLQQRVKEVITKQAAVHRCNASVNLTEPMPPTVNNKDLYKQFKKVVRDLLGPVMGSEDFSYFAE--------TIPGHFSLLGMQDETNG-YASSHSPLYRINED--------------------------------------------------------VLPYGAAIHASMAVQYLKEKAS-------------------------------
10	SPARKS	1xmba	0.182	0.742	5.296	threading_10	------KLLEFAPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVIGYIGTGE-PPFVALRADMDALPI--QEGVEWEHKSKIAGK-MHACGHDGHVTMLLGAAKILHEHRHH--LQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHARIPFGKAASRAGSFLAGAGVFEAVI------TGKTIDPVVAASSIVLSLQQLVSRETDPSKVVTVSKV--------NPDSITIGGTLRAFTG--FTQLQQRVKEVITKQAAVHRCNASVNLREPMPPTVNNKDLYKQFKKVVRDLLGPVMGSEDFSYFAE--------TIPGHFSLLGMQD-ETNGYASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKAS---------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.645 to 2q43A SCOP code=c.56.5.4	TM-score=0.640 to 2q43A SCOP code=c.56.5.4	TM-score=0.641 to 2q43A SCOP code=c.56.5.4	TM-score=0.660 to 2q43A SCOP code=c.56.5.4	TM-score=0.660 to 1cg2A SCOP code=c.56.5.4