Template-based Modeling Results for YTHA_ECOLI


  Submitted Primary Sequence

>Length 41
MIKNFIFDNLIILAVPFMIKTSLKTNLIFFFLCVFVPHMAS
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--------10--------20--------30--------40
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIKNFIFDNLIILAVPFMIKTSLKTNLIFFFLCVFVPHMAS
CCHHHHHCCEEEEEEHHHEEEHHHHCCHHHHHHHCCCCCCC
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--------10--------20--------30--------40
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MIKNFIFDNLIILAVPFMIKTSLKTNLIFFFLCVFVPHMAS
42121111100000000001000111000000000013224
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--------10--------20--------30--------40
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMIKNFIFDNLIILAVPFMIKTSLKTNLIFFFLCVFVPHMAS
1SPARKS1p58d0.2000.9761.241threading_1RIETWILRHIMAAILAYTIGTTHFQRVLIFILLTAIPSMT-
2PPA-I9paiB0.2190.7801.266threading_2APEEIIMDR----PFLFVVRHN-PTGTVLFMGQVMEP----
3SPARKS1jb0m0.2070.7071.163threading_3LTDTQVYVALVIALLPAVLAFRLSTELYK------------
4PPA-I2h4qB0.3230.7561.258threading_4HVLKFKVDH------PFHIRHN-KSKTILFFGRFCCPV---
5SPARKS1jb0j0.1940.8781.078threading_5-MKHFLTSTAPVLAAIWM---TITAGILIEFNRFY-PDLLF
6PPA-I1f0cB0.2060.8291.217threading_6VTNEFCADH------PFIYVIRHVDGKILFVGRYCSPTTN-
7SPARKS1jb0i0.1580.9271.059threading_7MMGSYAASFLPWIFIPVV--CWLMPTVVMGLLFLYIEGEA-
8PPA-I1p58D0.2000.9761.105threading_8RIETWILRHIMAAILAYTIGTTHFQRVLIFILLTAIPSMT-
9PPA-I3bz2T0.1330.7321.095threading_9-----------METITYVFIFACIIALFFFAIFFREPPRIT
10MUSTER2rf1A20.3000.9760.807threading_10ILEALGYEDVKVLSVPVTY-TSLKNKDIDVFLGNWMPTMEA

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.620 to 1z0jB
SCOP code=a.2.19.1
TM-score=0.537 to 1p58D
SCOP code=i.17.1.1
TM-score=0.397 to 1xi7A
SCOP code=g.3.6.5
TM-score=0.398 to 2b5iB
SCOP code=b.1.2.1
TM-score=0.549 to 1iijA
SCOP code=j.35.1.1