Template-based Modeling Results for YTCA_ECOLI

Submitted Primary Sequence

>Length 91
MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWFFCAIASLILTLITRRVIQRANINLAFVGIIYTALFALYAMLFWLAFF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWFFCAIASLILTLITRRVIQRANINLAFVGIIYTALFALYAMLFWLAFF
CCHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWFFCAIASLILTLITRRVIQRANINLAFVGIIYTALFALYAMLFWLAFF
4532122101202310000000001002012101100110000000000000010002200221200000000000000000000000112
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWFFCAIASLILTLITRRVIQRANINLAFVGIIYTALFALYAMLFWLAFF
1	HHPRED-g	1fft_B	0.145	0.681	1.039	threading_1	----------------------------LDPKGQIGLEQRSLILTAFGPAILMAVGFA-WKYRANKSNKVEAVVWTVPIIFLAVLTWKTTH
2	SAM-T99	3cjyA2	0.169	0.780	1.145	threading_2	RRKDGAPLDAASLAFADFLPIALATGCSLDNSLRITGAAAPGWCLCDIIPSSASGFAQGQVTLWDQSGRLL--------------------
3	SAM-T99	3cjyA	0.169	0.780	1.112	threading_3	RRKDGAPLDAASLAFADFLPIALATGCSLDNSLRITGAAAPGWCLCDIIPSSASGFAQGQVTLWDQSGRLL--------------------
4	MUSTER	2ahzA	0.163	0.945	0.775	threading_4	LKRMLRACLRAWKDKEFQVLFVLTILTLISGTI--FYSTVEGLPIDALYFSVVTLTT---VGDGNFPQTDFGKIFTILYIFIGIGLVFGFI
5	SPARKS	3eama	0.181	0.912	0.647	threading_5	STSTLIAHIAFNILVETNLPK--------TPYMTYTGAIIFMYLFYFVAVIEVTVQHYLKPARAASITRASRIAFPVVFLLANIILAFLFF
6	PROSPECT2	1d8ba	0.099	0.890	0.622	threading_6	ELNNLRMTYERLRELSLNLG---------NRMVPPVGNFMPDSILKKMAA-ILPMNDSAFATLGTVEDKYRRRFKYFKATIADLSKKRSSE
7	PPA-I	1ifpA	0.227	0.484	0.608	threading_7	-----------------------------------------------MQSVITDVTGQLTAVQADITTIGGAIIVLAAVVLGIRWIKAQFF
8	HHPRED-l	3utk_A	0.173	0.571	0.858	threading_8	--------------------------------------VPANEQISQLASLVAASKDDGTILKTAVNVAVSENLYQGLLKDGSSFNRMPF-
9	HHPRED-g	1r3s_A	0.120	0.549	0.673	threading_9	IGQLVKQMLDDFGPHRYIA----NLGHGLYPDMDPEH----------VGAFVDAVHKHSRLLRQ---------------------------
10	SP3	2ahya	0.205	0.967	0.635	threading_10	MLSFLLTLKRMLRACLWKDKEFQVLLTILTLISGTIFSTVEGLPIDALYFSVVTLTT---VGDGNFSQTDFGKIFTILYIFIGIGLVFGFI

Predicted Tertiary Structure


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TM-score=0.378 to 1a29A SCOP code=a.39.1.5	TM-score=0.558 to 1tbuB SCOP code=d.38.1.3	TM-score=0.562 to 1tbuB SCOP code=d.38.1.3	TM-score=0.600 to 1xl6A SCOP code=b.1.18.16	TM-score=0.649 to 1pd3A SCOP code=a.30.3.1