Template-based Modeling Results for YRDB_ECOLI

Submitted Primary Sequence

>Length 85
MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP
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--------10--------20--------30--------40--------50--------60--------70--------80

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP
CCCCCCCCCHHHHCCCCCEEEEEEEECCCEEEEEEEHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCEECC
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--------10--------20--------30--------40--------50--------60--------70--------80

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP
5432120233321153320000000021110100010310032132321310000032111103210220032223233120204
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--------10--------20--------30--------40--------50--------60--------70--------80

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP
1	MUSTER	2gpiA	0.333	0.988	3.807	threading_1	GNQSIIFTEQLTWDVQLSAIHFTAQQQGV-IDCYIGQKVLEHLAAENNSEQALSLFEQFRFDIEEQAEKLIEQEAFDVQGHIQVE
2	SPARKS	2gpia	0.333	0.988	4.678	threading_2	GNQSIIFTEQLTWDVQLSAIHFTAQQQGV-IDCYIGQKVLEHLAAENNSEQALSLFEQFRFDIEEQAEKLIEQEAFDVQGHIQVE
3	PROSPECT2	2gpiA	0.333	0.988	1.603	threading_3	GNQSIIFTEQLTWDVQLSAIHFTAQQQGV-IDCYIGQKVLEHLAAEKNSEQALSLFEQFRFDIEEQAEKLIEQEAFDVQGHIQVD
4	PPA-I	2gpiA	0.333	0.988	8.902	threading_4	GNQSIIFTEQLTWDVQLSAIHFTAQQQGV-IDCYIGQKVLEHLAAENNSEQALSLFEQFRFDIEEQAEKLIEQEAFDVQGHIQVE
5	HHPRED-l	2gpi_A	0.341	0.965	8.845	threading_5	-NQSIIFTEQLTWDVQLSAIHFTAQQQG-VIDCYIGQKVLEHLAAEKISEQALSLFEQFRFDIEEQAEKLIEQEAFDVQGHIQV-
6	HHPRED-g	2gpi_A	0.337	0.976	7.120	threading_6	-NQSIIFTEQLTWDVQLSAIHFTAQQQG-VIDCYIGQKVLEHLAAEKISEQALSLFEQFRFDIEEQAEKLIEQEAFDVQGHIQVE
7	SP3	2gpia	0.333	0.988	2.164	threading_7	GNQSIIFTEQLTWDVQLSAIHFTAQQQGV-IDCYIGQKVLEHLAAENNSEQALSLFEQFRFDIEEQAEKLIEQEAFDVQGHIQVE
8	SAM-T99	2gpiA	0.337	0.976	3.585	threading_8	GNQSIIFTEQLTWDVQLSAIHFTAQQQGV-IDCYIGQKVLEHLAAEKINEQALSLFEQFRFDIEEQAEKLIEQEAFDVQGHIQV-
9	MUSTER	2vrgA	0.155	0.835	0.735	threading_9	MSQELQLHYFKMHDYDGN------LLDGLEL-----STAITHVHKEEGSEQAP-LMSED--ELINIIDGVLRDDDKNNDGYIDYA
10	SPARKS	2dama	0.141	0.753	0.931	threading_10	SSGSSGAPEERDLTQEQTE----------------KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGSSSG-----

Predicted Tertiary Structure


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TM-score=0.927 to 2gpiA SCOP code=d.354.1.1	TM-score=0.925 to 2gpiA SCOP code=d.354.1.1	TM-score=0.927 to 2gpiA SCOP code=d.354.1.1	TM-score=0.919 to 2gpiA SCOP code=d.354.1.1	TM-score=0.927 to 2gpiA SCOP code=d.354.1.1