Template-based Modeling Results for YQCA_ECOLI


  Submitted Primary Sequence

>Length 149
MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS
CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS
54200000002101021002201210242214020011230232203332000000001131210310120020034222113302000000011202100200210020044121210021020112332312210220022003114
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS
1MUSTER1ykgA0.2750.9533.424threading_1---ITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVE----YQAAASEWRARVVDALK
2SPARKS1ja1a20.2180.9873.454threading_2GRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDG--NLEEDFITWREQFWPAVC
3PROSPECT22hnaA0.2860.9872.724threading_3MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLE--DLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLLK
4PPA-I1ykgA0.2750.9534.411threading_4---ITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVE----YQAAASEWRARVVDALK
5HHPRED-l1ykg_A0.2840.9463.179threading_5---ITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADV----EYQAAASEWRARVVDAL-
6HHPRED-g1tll_A0.2640.9663.212threading_6-AKATILYATETGKSQAYAKTLCEIF-KHAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMR-PLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELC--GQEEAFRTWAKKVFKAAC
7SP31ja1a20.2180.9873.495threading_7GRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDG--NLEEDFITWREQFWPAVC
8SAM-T992hnaA0.2860.9873.994threading_8MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLE--DLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLLK
9MUSTER2hnaA0.2860.9873.398threading_9MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLE--DLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLLK
10SPARKS1ja1a0.2240.9873.328threading_10GRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGN--LEEDFITWREQFWPAVC

  Predicted Tertiary Structure

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TM-score=0.956 to 1ykgA
SCOP code=c.23.5.2
TM-score=0.365 to 1xheB
SCOP code=c.23.1.1
TM-score=0.898 to 1ja0A
SCOP code=b.43.4.1
TM-score=0.698 to 1ykgA
SCOP code=c.23.5.2
TM-score=0.956 to 1ykgA
SCOP code=c.23.5.2