Template-based Modeling Results for YNID_ECOLI


  Submitted Primary Sequence

>Length 35
MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG
12345678901234567890123456789012345
--------10--------20--------30
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
12345678901234567890123456789012345
--------10--------20--------30
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG
45333213310100000000000000020001114
12345678901234567890123456789012345
--------10--------20--------30
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG
1SPARKS1jb0m0.1940.8861.417threading_1MALT----DTQVYVALVIALLPAVLAFRLSTELYK
2PPA-I1spfA0.1560.9141.303threading_2IPCCPV---NLKRLLVVVVVVVLVVVVIVGALLMG
3SP31jb0m0.1940.8861.087threading_3MALT----DTQVYVALVIALLPAVLAFRLSTELYK
4SPARKS3a3yg0.2500.9141.351threading_4GPDNRFD---YYRLRVVGLIVAAVLCVIGIIILLA
5PPA-I2k1lA0.2291.0001.286threading_5PPVSRGLTGGEIVAVIFGLLLGAALLLGILVFRSR
6SP32zxeg0.2500.9141.044threading_6GPDNRFD---YYRLRVVGLIVAAVLCVIGIIILLA
7SPARKS2zxeg0.1820.9431.351threading_7GPDN--DERDYYRLRVVGLIVAAVLCVIGIIILLA
8PPA-I1jb0I0.1431.0001.164threading_8MGSYAASFLPWIFIPVVCWLMPTVVMGLLFLYIEG
9SP33a3yg0.2810.9141.029threading_9GPDNRFD---YYRLRVVGLIVAAVLCVIGIIILLG
10SPARKS1jb0x0.2070.8291.314threading_10-PTYA-FRTFWAVLLLAINFLVAAYYFAAAA----

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.350 to 1eciA
SCOP code=a.33.1.1
TM-score=0.578 to 1kd9A
SCOP code=h.1.3.1
TM-score=0.631 to 1kv4A
SCOP code=j.4.1.3
TM-score=0.578 to 1kd9A
SCOP code=h.1.3.1
TM-score=0.627 to 1kd9A
SCOP code=h.1.3.1