Template-based Modeling Results for YNAK_ECOLI

Submitted Primary Sequence

>Length 87
MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR
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--------10--------20--------30--------40--------50--------60--------70--------80

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR
CCCCCEEEEEEHHHCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCEEEECHHHHHHHHHCCCCCCCEEEECCCCHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR
554322112020320121231123222310320030024111211000133010000200010022151320200012222332435
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--------10--------20--------30--------40--------50--------60--------70--------80

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR
1	MUSTER	1vz0B	0.312	0.920	2.461	threading_1	------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRDGYELVAGERRYRAALMAGLQEVPAVVKD-LTDREALE
2	SPARKS	1vz0a	0.284	0.931	2.527	threading_2	------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRDGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALEL
3	PROSPECT2	1xw3A	0.167	0.966	1.161	threading_3	SGRIAAVHNVPLSVLIRP--LPSVLDPAKVQSLVDTIREDPDVPPIDVGDYFYSFGGCHRYAAYQQLQRETIPAKLVQ-STLSDLRQ
4	PPA-I	1vk1A2	0.157	0.954	3.604	threading_4	----IPVKKVEYVFIELDKMPHEQLVQRELEDFIESVTGSGFWKPMLLADEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVY
5	HHPRED-l	1vz0_A	0.316	0.908	4.776	threading_5	------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRPGYELVAGERRYRAALMAGLQEVPAVVKD-LTDREAL-
6	HHPRED-g	1vz0_A	0.284	0.931	4.159	threading_6	------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRPGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALEL
7	SP3	1vz0a	0.284	0.931	2.628	threading_7	------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRDGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALEL
8	SAM-T99	1vz0B	0.284	0.931	3.975	threading_8	------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRDGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALEL
9	MUSTER	1vk1A2	0.198	0.931	1.992	threading_9	IPKKVEYVFIELDKM------PHQLVQRELEDFIESVTGSGIWKPMLLADEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVY
10	SPARKS	1vk1a	0.198	0.931	1.721	threading_10	PVKKVEYVFIELDKM------PHELVQRELEDFIESVTGSGIFKPMLLADEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVY

Predicted Tertiary Structure


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TM-score=0.520 to 1vz0B SCOP code=a.4.14.1	TM-score=0.738 to 1vk1A SCOP code=d.268.1.2	TM-score=0.529 to 1vz0B SCOP code=a.4.14.1	TM-score=0.702 to 2b6fA SCOP code=d.268.1.4	TM-score=0.752 to 1vk1A SCOP code=d.268.1.2