Template-based Modeling Results for YMIA_ECOLI


  Submitted Primary Sequence

>Length 42
MPSGNQEPRRDPELKRKAWLAVFLGSALFWVVVALLIWKVWG
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--------10--------20--------30--------40
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPSGNQEPRRDPELKRKAWLAVFLGSALFWVVVALLIWKVWG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MPSGNQEPRRDPELKRKAWLAVFLGSALFWVVVALLIWKVWG
453233334422301220000000000000000000002113
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--------10--------20--------30--------40
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMPSGNQEPRRDPELKRKAWLAVFLGSALFWVVVALLIWKVWG
1MUSTER2vq2A20.3140.8331.184threading_1-----QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV--
2SPARKS1ehkb20.1320.9051.222threading_2---DEHKAHKAILAYEKGWLAFSLAMLFVFIALIAYTLATH-
3PPA-I1spfA0.2570.8331.190threading_3----LRIPCCPVNLKRLLVVVVVVVLVVVVIVGALLMGL---
4MUSTER1lghB0.2000.9521.148threading_4SLSGLTE--EEAIAVHDQFKTTFSAFIILAAVAHVLVWVWWF
5SPARKS1m56d10.2500.8571.217threading_5MDITQQEKTFAGFVRMVTWAAVVIVAALIFLALANA------
6PPA-I2jwaA0.2000.9521.179threading_6--GCPAEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQ
7MUSTER1spfA0.3120.7621.145threading_7IPC----PV---NLKRLLVVVVVVVLVVVVIVGALLMGL---
8SPARKS1m56d0.2500.8571.217threading_8MDITQQEKTFAGFVRMVTWAAVVIVAALIFLALANA------
9PPA-I1lghB0.1220.9761.084threading_9-RSLSGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP
10MUSTER2jwaA0.2310.9291.134threading_10CPA---EQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQ

  Predicted Tertiary Structure

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TM-score=0.690 to 1ouvA
SCOP code=a.118.18.1
TM-score=0.618 to 2r2vA
SCOP code=h.1.3.1
TM-score=0.667 to 1kv4A
SCOP code=j.4.1.3
TM-score=0.575 to 1spfA
SCOP code=j.35.1.1
TM-score=0.578 to 2jr8A
SCOP code=j.4.1.3