Template-based Modeling Results for YMFM_ECOLI

Submitted Primary Sequence

>Length 112
MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK
CCCCCHHHHHHEEEEEECCCCCEEEEEEEEECCCCCCEEEEECHHHHHCCCCCCCCEEEEEHHHCCCCEEECCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK
5531222123010010102213020100000203232200100001110121233211000130221220123022221122342311121011121312132310012334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK
1	MUSTER	2b8aA	0.178	0.902	0.624	threading_1	MSR-QKEYKCGDLVFAKMKG---PHWPARIDEMPEAA--VKSTANKYQVFFFG-THETAFLGP----KDLFPYEESEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKK
2	SPARKS	1iray	0.116	1.000	0.524	threading_2	EQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR
3	PROSPECT2	3tonA5	0.083	0.973	0.557	threading_3	EPALNTHLSRQKFKIALDDEGTAGGWLLASFSASQNTMQSHIIFNNYITGTNPLKLGYIEIWGVGSVPVTSVSISVS---GMVITPSFNNDPTTQVLSIDVTDRNISLHNFT
4	PPA-I	2b8aA	0.178	0.902	0.565	threading_4	MSRRQKEYKCGDLVFAKMKGYPARIDEMPEAAVKSTANKYQVFF----FGT----HETAFL---GPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKK
5	HHPRED-l	3jwd_A	0.244	0.804	0.903	threading_5	ASKLREQFG----------NNK-TII--FKQSSGGDPEIVTHWFNC--------GGEFFYCNSLFGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSEIFRPGGG-
6	HHPRED-g	3fhd_A	0.195	0.688	0.702	threading_6	CDPIYAAYQRDFFYSISKPA----VEYVGLGKLPSESDYLVAYDQEWEAC----RKLT--P-----LHN--------------------LIRECILHNSTTESDVYVLTRGQ
7	SP3	1r5ja	0.148	0.964	0.470	threading_7	IHSTADTVRPALQIIKTKPGIS-RTSGVFLNRENTSE---RYVFADCAINIDPTAQELAEIAVNTAEDIDPKIALSFSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQ
8	SAM-T99	1cttA	0.275	0.714	0.451	threading_8	MNEL--NSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQDHGY------------------------------ALTGDALSQAAIAAANRSHMKSPSGVALECK
9	MUSTER	3es4A	0.149	0.902	0.568	threading_9	IFNISD---DVDLVPAPAEGGGSYRRQIWQDDVENGTIVAVW--AEPGIYNYGRDLEETFV--VVEGEALYSQADADPVIGPGSAKGVPS---RLEILSSFRKLATVIPKP-
10	SPARKS	2pia_	0.131	0.955	0.499	threading_10	QGAPLPPFEAGANLTVAVPNGS-RRTYSLC-NDSQERNRYVIAVK--RDSN-GRGGSISFIDDTSEGDAVEVSLPRNEFPLDKRAKSFITPMLSMARQLRAEGLRYLTRDPE

Predicted Tertiary Structure


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TM-score=0.396 to 1dubA SCOP code=c.14.1.3	TM-score=0.818 to 2b8aA SCOP code=b.34.9.2	TM-score=0.655 to 1n10A SCOP code=b.7.3.1	TM-score=0.615 to 1iraY SCOP code=b.1.1.4	TM-score=0.502 to 1nofA SCOP code=b.71.1.2