Template-based Modeling Results for YMDE_ECOLI

Submitted Primary Sequence

>Length 107
MEDGVQAMRDYLAGLDIASPEHQVLMNVTAKSEVAPSIIKENLSLHLTHTVKWTESLDTFLNMPTPVAFLEISNKPYLGNMLNDFAGVDQQRVMHCRKAFSDAKVFK
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEDGVQAMRDYLAGLDIASPEHQVLMNVTAKSEVAPSIIKENLSLHLTHTVKWTESLDTFLNMPTPVAFLEISNKPYLGNMLNDFAGVDQQRVMHCRKAFSDAKVFK
CCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCHHHEEHHHHHCCHHHHCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEDGVQAMRDYLAGLDIASPEHQVLMNVTAKSEVAPSIIKENLSLHLTHTVKWTESLDTFLNMPTPVAFLEISNKPYLGNMLNDFAGVDQQRVMHCRKAFSDAKVFK
42301220220022031221301000001132311121013100121121010120011003232210001001330003002201323331002023222323225
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEDGVQAMRDYLAGLDIASPEHQVLMNVTAKSEVAPSIIKENLSLHLTHTVKWTESLDTFLNMPTPVAFLEISNKPYLGNMLNDFAGVDQQRVMHCRKAFSDAKVFK
1	MUSTER	3ezoA	0.190	0.981	2.551	threading_1	LKPASDKLREYLAGVDVKAPKISVVNNIDVAVVSDPAAIKDALVRQAAGPVRWVECVQHIAREG-VTHVIECGPGKVLAGLTKRIDGNLVGASVFDPASLDEALKL-
2	SPARKS	3qata	0.179	0.991	4.273	threading_2	MQPAANAMKNALLTVNKTAPIVPLIANVSVIPESDPERIVSLLVQQVTGRVRWRETIEWISANGV-NTLFEIGSGKVLTGLARRINKDIKALTVGTAEEIAALRVLG
3	PROSPECT2	3ezoA	0.200	0.981	1.059	threading_3	MKPASDKLREYLAGVDVKAPKISVVNNIDVAVVSDPAAIKDALVRQAAGPVRWVECVQHIAREGVT-HVIECGPGKVLAGLTKRIDGNLVGASVFDPASLDEALKL-
4	PPA-I	3eenA2	0.189	0.991	2.072	threading_4	MRDAANQLGEAMAGLSWHAPQIPVVQNVDARVHDGSAAIRQALVEQLYLPVQWTGCVQALASQGI-TRIAECGPGKVLSGLIKRIDKSLDARPLATPADYAGALDAW
5	HHPRED-l	2c2n_A	0.214	0.916	3.193	threading_5	MEPAVEPLTQALKAVDIKKPLVSVYSNVHGHRYRHPGHIHKLLAQQLVSPVKWEQTMHAIYERGF-PQTFEVGPGRQLGAILKSCNMQA-WKSYSAVDV------L-
6	HHPRED-g	1mla_A	0.194	0.963	2.704	threading_6	MKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVE-HLYEVGPGKVLTGLTKRIVDTLTASALNEPSAMAAAL---
7	SP3	3qata	0.179	0.991	4.133	threading_7	MQPAANAMKNALLTVNKTAPIVPLIANVSVIPESDPERIVSLLVQQVTGRVRWRETIEWISANGV-NTLFEIGSGKVLTGLARRINKDIKALTVGTAEEIEALRVLG
8	SAM-T99	3ezoA	0.192	0.972	3.018	threading_8	LKPASDKLREYLAGVDVKAPKISVVNNIDVAVVSDPAAIKDALVRQAAGPVRWVECVQHIAREGVT-HVIECGPGKVLAGLTKRIDGNLVGASVFDPASLDEALK--
9	MUSTER	3im9A	0.165	0.963	2.534	threading_9	MKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGV-DHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWN---
10	SPARKS	3im9a	0.165	0.963	4.269	threading_10	MKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGV-DHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWN---

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.606 to 1nm2A SCOP code=c.19.1.1	TM-score=0.600 to 1nm2A SCOP code=c.19.1.1	TM-score=0.573 to 1nm2A SCOP code=c.19.1.1	TM-score=0.449 to 1eflA SCOP code=c.2.1.7	TM-score=0.577 to 1nm2A SCOP code=c.19.1.1