Template-based Modeling Results for YJDI_ECOLI

Submitted Primary Sequence

>Length 76
MDQALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVVKVIDTCPSGALKYRHK
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--------10--------20--------30--------40--------50--------60--------70

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDQALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVVKVIDTCPSGALKYRHK
CCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHEEECC
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--------10--------20--------30--------40--------50--------60--------70

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDQALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVVKVIDTCPSGALKYRHK
5432123221321313201000121002000100300030022342110104303121002002301121021236
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--------10--------20--------30--------40--------50--------60--------70

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDQALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVVKVIDTCPSGALKYRHK
1	MUSTER	1rofA	0.224	0.763	2.211	threading_1	-----------------MKVRVDADACIGCGVCENLCPDVFQLGDDGKVLQPETDLPCAKDAADSCPTGAISVEE-
2	SPARKS	1fxra	0.167	0.789	1.241	threading_2	----------------ARKFYVDQDECIACESCVEIAPGAFAMDPEIEKDVEGASQEEVEEAMDTCPVQCIHWEDE
3	PROSPECT2	1fxra	0.167	0.789	0.757	threading_3	AR----------------KFYVDQDECIACESCVEIAPGAFAMDPEIEKDVEGASQEEVEEAMDTCPVQCIHWEDE
4	PPA-I	1rofA	0.241	0.763	3.447	threading_4	-----------------MKVRVDADACIGCGVCENLCPDVFQLGDKAKVLQPETDLPCAKDAADSCPTGAISVEE-
5	HHPRED-l	1dax_A	0.169	0.776	2.951	threading_5	----------------ARKFYVDQDECIACESCVEIAPGAFAMDPEEKKDVEGASQEEVEEAMDTCPVQCIHWED-
6	HHPRED-g	1dax_A	0.167	0.789	2.524	threading_6	----------------ARKFYVDQDECIACESCVEIAPGAFAMDPEIEKDVEGASQEEVEEAMDTCPVQCIHWEDE
7	SP3	1fxra	0.167	0.789	1.155	threading_7	----------------ARKFYVDQDECIACESCVEIAPGAFAMDPEIVKDVEGASQEEVEEAMDTCPVQCIHWEDE
8	SAM-T99	1rofA	0.241	0.763	1.132	threading_8	-----------------MKVRVDADACIGCGVCENLCPDVFQLGDKAKVLQPETDLPCAKDAADSCPTGAISVEE-
9	MUSTER	1sizA	0.150	0.789	2.115	threading_9	----------------AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQEDEELYNCAKEAMEACPVSAITIEEA
10	SPARKS	1vjw_	0.246	0.750	1.029	threading_10	-----------------MKVRVDADACIGCGVCENLCPDVFQLGDKAKVLQPETDLPCAKDAADSCPTGAISVE--

Predicted Tertiary Structure


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TM-score=0.811 to 1rofA SCOP code=d.58.1.4	TM-score=0.811 to 1rofA SCOP code=d.58.1.4	TM-score=0.712 to 1daxA SCOP code=d.58.1.4	TM-score=0.673 to 1sizA SCOP code=d.58.1.4	TM-score=0.840 to 1rofA SCOP code=d.58.1.4