Template-based Modeling Results for YIFN_ECOLI

Submitted Primary Sequence

>Length 149
MAINFSPKVGEILECNFGNYPVSQNGPFSTTYYDGRIPPEMIKNRLVVVLNGKINGNACIVVPLSTTRDQDKLKRGMHVEIASNVINDLQFFDQQIRWAKADLVQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAISLIN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAINFSPKVGEILECNFGNYPVSQNGPFSTTYYDGRIPPEMIKNRLVVVLNGKINGNACIVVPLSTTRDQDKLKRGMHVEIASNVINDLQFFDQQIRWAKADLVQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAISLIN
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECEEEEEEHHHHEEECCCCCCCEECCCHHHHHHHHHHHHHHCCHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAINFSPKVGEILECNFGNYPVSQNGPFSTTYYDGRIPPEMIKNRLVVVLNGKINGNACIVVPLSTTRDQDKLKRGMHVEIASNVINDLQFFDQQIRWAKADLVQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAISLIN
55242214201000000121312321211221231211110022100000124232100000001224333313210001012210231321333210010100000013201212322221120013310110130003102122125
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAINFSPKVGEILECNFGNYPVSQNGPFSTTYYDGRIPPEMIKNRLVVVLNGKINGNACIVVPLSTTRDQDKLKRGMHVEIASNVINDLQFFDQQIRWAKADLVQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAISLIN
1	MUSTER	1ne8A	0.196	0.752	2.081	threading_1	--------------------LIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIFSPTAIVAAITAQ--IQKAKLPTHVEIDAK-----RYGFERDSVILLEQIRTIDKQRLTDK-------ITHLDDEMMDKVDEALQISLA---LID
2	SPARKS	1ne8a	0.196	0.752	1.834	threading_2	--------------------LIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIFSPTAIVAAITAQ--IQKAKLPTHVEI-----DAKRYGFERDSVILLEQIRTIDKQRLTDK-------ITHLDDEMMDKVDEALQISLA---LID
3	PROSPECT2	1ne8a	0.168	0.758	1.294	threading_3	LI----VKRGDVYFADLSPVVGSEQG----------------GVRPVLVIQNDIFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFE-------RDSVILLEQIRTIDKQRLTDK-------ITHLDDEMMDKVDEALQISLALID--F
4	PPA-I	1ne8A	0.150	0.758	2.588	threading_4	--------------------LIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFE-------RDSVILLEQIRTIDKQRLTDK-------ITHLDDEMMDKVDEALQISLALIDF--
5	HHPRED-l	1ub4_A	0.212	0.664	3.948	threading_5	-VSRYVPDMGDLIWVDFDP-----------------------GHRPAVVLSPFMYNGMCLCVPCTTQSK----GYPFEVVLSG---------QERDGVALADQVKSIARARGATK-------KGTVAPEELQLIKAKINVLIG------
6	HHPRED-g	1ub4_A	0.222	0.664	4.899	threading_6	-----------------VSRYVPDMGDLIWVDFDP-------GHRPAVVLSPFMYNNMCLCVPCTTQS----KGYPFEVVLS---------GQERDGVALADQVKSIARARG-------ATKKGTVAPEELQLIKAKINVLIG------
7	SP3	1ne8a	0.214	0.752	1.859	threading_7	L----IVKRGDVYFADLS----PVVGS------------EQGGVRPVLVIQNDIFSPTAIVAAITAQ--IQKAKLPTHVEI-----DAKRYGFERDSVILLEQIRTIDKQRLTDK-------ITHLDDEMMDKVDEALQISLA---LID
8	SAM-T99	1mhcA1	0.173	0.933	0.668	threading_8	RPGRGEPQYISVGYVDDVQFQRCDSIEEIPR--MEPRAPWMEKERPLRYYNQSEGGILQWMVSCEVGPDMRLL--GAHYQAAYDGSDYITLNEDLSSWTAVDMVSQITKSRLESAGYFRAYVEGECLELLHRFLRN------GKEILQR
9	MUSTER	2c06A	0.131	0.718	1.670	threading_9	----------------------MERGEIWLVSLDPTAGHEQQGTRPVLIVTPAAVTRLPVVVPVTSG-GNFARTAGFAVSLDGVGIR-------TTGVVRCDQPRTID------MKARGGKRLERVPETIMNEVLGRLSTILT------
10	SPARKS	1m1fa	0.135	0.698	1.263	threading_10	----------------------MERGEIWLVSLDPTAGHEQQGTRPVLIVTPAAVTRLPVVVPVTSF----ARTAGFAVSLDGVGIR-------TTGVVRCDQPRTID------MKARGGKRLERVPETIMNEVLGRLSTILT------

Predicted Tertiary Structure


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TM-score=0.834 to 1ne8A SCOP code=b.34.6.2	TM-score=0.840 to 1ne8A SCOP code=b.34.6.2	TM-score=0.836 to 1ne8A SCOP code=b.34.6.2	TM-score=0.841 to 1ne8A SCOP code=b.34.6.2	TM-score=0.842 to 1ne8A SCOP code=b.34.6.2