Template-based Modeling Results for YHHM_ECOLI

Submitted Primary Sequence

>Length 119
MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVVVSNKREKPINDRRSRQQEVTPAGTSIRYEASFKPQSGGMEQTFRLDAQQYHALTVGDKGTLSYKGTRFVSFVGEQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVVVSNKREKPINDRRSRQQEVTPAGTSIRYEASFKPQSGGMEQTFRLDAQQYHALTVGDKGTLSYKGTRFVSFVGEQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECHHHHHCCCCCCEEEEEEEEEEEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVVVSNKREKPINDRRSRQQEVTPAGTSIRYEASFKPQSGGMEQTFRLDAQQYHALTVGDKGTLSYKGTRFVSFVGEQ
55421111000000000000121022123324432011111102012243321232213332222112221000001122322201020203112202212201010200100112244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVVVSNKREKPINDRRSRQQEVTPAGTSIRYEASFKPQSGGMEQTFRLDAQQYHALTVGDKGTLSYKGTRFVSFVGEQ
1	MUSTER	2l0cA	0.835	0.714	2.911	threading_1	----------------------------------MAPLQQKQVVVSNKREKPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVGDQGTLSYKGTRFVGFVSRT
2	SPARKS	2l0ca	0.835	0.714	3.464	threading_2	----------------------------------MAPLQQKQVVVSNKREKPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVGDQGTLSYKGTRFVGFVSRT
3	PROSPECT2	2l0cA	0.835	0.714	1.613	threading_3	M----------------------------------APLQQKQVVVSNKREKPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVGDQGTLSYKGTRFVGFVSRT
4	PPA-I	2l0cA	0.835	0.714	6.148	threading_4	----------------------------------MAPLQQKQVVVSNKREKPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVGDQGTLSYKGTRFVGFVSRT
5	HHPRED-l	2l0c_A	0.845	0.706	6.232	threading_5	----------------------------------MAPLQQKQVVVSNKREKPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVGDQGTLSYKGTRFVGFVSR-
6	HHPRED-g	3rd4_A	0.264	0.605	5.343	threading_6	-----------------------------------APVKLYMVEVIDKKEIAANE------------ITHYYQVTFRLTTDDKDLVLNIDKSSYQNIEPEMKGRLFMQGSRFVQFETDV
7	SP3	2l0ca	0.835	0.714	2.918	threading_7	----------------------------------MAPLQQKQVVVSNKREKPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVGDQGTLSYKGTRFVGFVSRT
8	SAM-T99	2l0cA	0.845	0.706	4.708	threading_8	M----------------------------------APLQQKQVVVSNKREKPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVGDQGTLSYKGTRFVGFVSR-
9	MUSTER	3rd4A	0.264	0.605	1.451	threading_9	-----------------------------------APVKLYMVEVIDKKEIAAN------------EITHYYQVTFRLTTDDRKLVLNIDKSSYQNIEPEMKGRLFMQGSRFVQFETDV
10	SPARKS	3q6ca	0.688	0.538	1.801	threading_10	-------------------------------------LLQKRVIVSNKREKVINE---------------RYEASFRP--EGLEVVFRLDAPQYHALSVGD-RGLSYKGTAFVAFTPDP

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.542 to 1uebA SCOP code=b.34.5.2	TM-score=0.542 to 1uebA SCOP code=b.34.5.2	TM-score=0.542 to 1uebA SCOP code=b.34.5.2	TM-score=0.545 to 1uebA SCOP code=b.34.5.2	TM-score=0.542 to 1uebA SCOP code=b.34.5.2