Template-based Modeling Results for YGIW_ECOLI

Submitted Primary Sequence

>Length 130
MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHCCCCCCEEEEEEEEEEEECCCEEEEECCCCCEEEEECHHHCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNP
4311000100000000000013211121221232222113123120110210321433120002010012024120102133120101012321121212341101010202242420101021022246
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNP
1	MUSTER	1nnxA	0.968	0.715	3.063	threading_1	-----------------------------------QGGFSGPSGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKV--
2	SPARKS	1nnxa	0.968	0.715	3.506	threading_2	-----------------------------------QGGFSGPSGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKV--
3	PROSPECT2	1nnxA	0.968	0.715	1.857	threading_3	-----------------------------------QGGFSGPSGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKV--
4	PPA-I	1nnxA	0.968	0.715	4.477	threading_4	-----------------------------------QGGFSGPSGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKV--
5	HHPRED-l	1nnx_A	1.000	0.692	8.061	threading_5	------------------------------------GGF-GP-GSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKV--
6	HHPRED-g	1nnx_A	1.000	0.692	7.535	threading_6	------------------------------------GGF-GP-GSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKV--
7	SP3	1nnxa	0.968	0.715	3.255	threading_7	-----------------------------------QGGFSGPSGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKV--
8	SAM-T99	1nnxA	0.968	0.715	5.691	threading_8	-----------------------------------QGGFSGPSGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKV--
9	MUSTER	3i7fA1	0.159	0.869	1.014	threading_9	LK------------TPELVSGENFKVM----PMHQSQPCYKTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGFLFLRKGIYTCQALVMKEFVQ-QKISAESICDITGIVKATQQDVEIHVTSIAVVSL
10	SPARKS	1b8aa1	0.159	0.677	1.080	threading_10	------------------------------------------MYRTHYSSEITEELNGQKVKVAGWVWEVKDLGFLWIRDRDGIVQITAPKKKVDPPKLRSEDVVAVEGVVNFTPKGFEILPEKIVVLNR

Predicted Tertiary Structure


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TM-score=0.843 to 1nnxA TM-score=0.982 to native SCOP code=b.40.10.1	TM-score=0.843 to 1nnxA TM-score=0.982 to native SCOP code=b.40.10.1	TM-score=0.843 to 1nnxA TM-score=0.982 to native SCOP code=b.40.10.1	TM-score=0.843 to 1nnxA TM-score=0.982 to native SCOP code=b.40.10.1	TM-score=0.843 to 1nnxA TM-score=0.982 to native SCOP code=b.40.10.1

Experimental Structure

Download 1nnxA

SCOP code=b.40.10.1