Template-based Modeling Results for YGDR_ECOLI

Submitted Primary Sequence

>Length 72
MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
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--------10--------20--------30--------40--------50--------60--------70

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCEECCCCCCEEEECCCCCEEEECHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
443101100000000001101121001123220001222022253211010214412211024320232245
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--------10--------20--------30--------40--------50--------60--------70

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
1	MUSTER	3bduA	0.510	0.708	2.558	threading_1	--------------------SSNYVLHTNDGRTIVAEGKPKVDDETG-ISYTDAYGQQQQINRDNVKEAKGK
2	SPARKS	2jn0a	1.000	0.694	2.590	threading_2	----------------------DYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
3	PROSPECT2	2jn0A	1.000	0.694	1.075	threading_3	----------------------DYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
4	PPA-I	3bduA	0.510	0.708	3.356	threading_4	--------------------SSNYVLHTNDGRTIVAEGKPKVDDETG-ISYTDAYGQQQQINRDNVKEAKGK
5	HHPRED-l	2rd1_A	0.521	0.667	4.512	threading_5	---------------------TNYV-TTKNGQTIVTQGKPQLDKETG-TSYTDQEGNQREINSNDVAQLIK-
6	HHPRED-g	2rd1_A	0.510	0.681	3.489	threading_6	---------------------TNYV-TTKNGQTIVTQGKPQLDKETG-TSYTDQEGNQREINSNDVAQLIKA
7	SP3	2jn0a	1.000	0.694	2.502	threading_7	----------------------DYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
8	SAM-T99	3bduA	0.510	0.708	2.884	threading_8	--------------------SSNYVLHTNDGRTIVAEGKPKVDDETG-ISYTDAYGQQQQINRDNVKEAKGK
9	MUSTER	2ra2B	0.510	0.708	2.379	threading_9	--------------------SGPNYVHTNDGRSIVTDGKPQTDNDTG-ISYKDANGNKQQINRTDVKEVALE
10	SPARKS	3bdua	0.510	0.708	2.284	threading_10	--------------------SSNYVLHTNDGRTIVAEGKPKVDDETG-ISYTDAYGQQQQINRDNVKEAKGK

Predicted Tertiary Structure


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TM-score=0.809 to 3bduA TM-score=0.763 to native SCOP code=b.38.1.6	TM-score=0.809 to 3bduA TM-score=0.763 to native SCOP code=b.38.1.6	TM-score=0.647 to 2k57A TM-score=0.712 to native SCOP code=b.38.1.6	TM-score=0.647 to 2k57A TM-score=0.712 to native SCOP code=b.38.1.6	TM-score=0.809 to 3bduA TM-score=0.763 to native SCOP code=b.38.1.6

Experimental Structure

Download 3fifB

SCOP code=b.38.1.6