Template-based Modeling Results for YGBF_ECOLI

Submitted Primary Sequence

>Length 94
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
CCEEEEEECCCCHHHHCHHHHEEEEECCCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCCEEEEECCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
3210000023013201020100001011101003012301210021002104301000000122321010100132321000031020011135
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
1	SPARKS	2i0xa	0.215	0.840	1.155	threading_1	--MYIVVVYDVGNKVKKFLRMHLNWVQNSVFEGEVTLAEFERIKEGLKKIIDENSSVIIYKLRSMP--PRETLGIEKNPIEEI-----------
2	PPA-I	3oq2A	0.138	0.926	1.475	threading_2	DAMLVLISYDVSRRIAKACQDYGQRVQYSVFECVVDPAQWAKLKHRLLSEMKEKDCLRFYYLGANWRNKVEHVGAKP--AYDPEGPLIL-----
3	SPARKS	3oq2a	0.141	0.904	1.118	threading_3	DAMLVLISYDVSRRIAKACQDYGQRVQYSVFECVVDPAQWAKLKHRLLSEMDKEKCLRFYYLGANWRNKVEHVGAKP--AYDPEG-------PL
4	PPA-I	2i0xA	0.215	0.840	1.326	threading_4	--MYIVVVYDVGNKVKKFLRMHLNWVQNSVFEGEVTLAEFERIKEGLKKIIENSDSVIIYKLRSMPPRETLGIEKNPIEEI-------------
5	PPA-I	2l66A	0.229	0.511	1.222	threading_5	------------------------AVEEIVKVSRIPAKVRQKF------QIKEGDLVKVTFDESEGVVKIQLLKEPWK----------------
6	PPA-I	1zpwX	0.132	0.809	1.193	threading_6	GKRLYAVAYDIPVKLANLLKSYGERVQLSVFECYLDERLLEDLRRRARRLLLGQDALRIYPVAGQ----VEVLGVGPLPE--------------
7	PPA-I	2ivyA	0.160	0.798	1.133	threading_7	-AMLYLIFYDITDNLRNRVAEFLDRIQYSVFMGDLNSSRLKDVEAGLKIIGNRKKFILIVPITENQFRERIVIGYS------------------
8	MUSTER	1bg6A	0.146	0.947	0.623	threading_8	ADVILIV---VPIHHASIAANIASYISEGLIILNPGATGGALEFRKILRENGAPEVTIGETS--SMLFTCRSERPGQVTVNAIKGAMDFACLPA
9	SPARKS	1zpwx	0.171	0.809	0.918	threading_9	GKRLYAVAYDIPDTRRVKLANLGERVQLSVFECYLDERLLEDLRRRARRLLDLGQALRIYPVAGQV--EVLGVGPLPE----------------
10	PROSPECT2	1qjga	0.140	0.915	0.623	threading_10	MN--------TPEHMTAVVQRYVAALNAGTVENPVGSEPTAAIREFYANSLKLPLAVELTQEVRAVAFAFIVSFEYQGRKTVVAPIDHFRFNGA

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.695 to 2i0xA SCOP code=d.58.58.1	TM-score=0.858 to 2i0xA SCOP code=d.58.58.1	TM-score=0.702 to 1zpwX SCOP code=d.58.58.1	TM-score=0.715 to 2i0xA SCOP code=d.58.58.1	TM-score=0.855 to 2i0xA SCOP code=d.58.58.1