Template-based Modeling Results for YGBA_ECOLI


  Submitted Primary Sequence

>Length 117
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
552332231120022000000242342322031021002101210240222333110330212011221231022003100110001000100100023323233123333334344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
1PPA-I1ltqA10.0941.0001.021threading_1AREFIAKNPGFYNINRDDYRQSIAHEERDYTKKKEGIVTGQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVPWTELVKRNSKRGTKAVPIDVLRSYKSRE
2PPA-I3l0iC20.1031.0001.016threading_2TISPKGYAILQSLWGAASDYSRAAATLTESTVEPGLVSAVNKSAFFDCKLSPNERATPDPDFKVGKSKILVGIQFIKDVADPTSALNHKIAAIQKLERSNNVNDETLESVLSSKGEN
3MUSTER3saeA30.1670.9230.768threading_3AFICSTGQFNKDVASMLNLYRASQLAFPGE-NILDEAKSFATKYLREA---LEKSETSSAWNN--KQNLSQEIKYALKTSWHASV---PRVEAKRYCQVYRPDYARIAKCVYKLPYV
4SPARKS2hz8a0.1310.9150.729threading_4ELRELLKAEQQAIKIYKEVLKKAKEGDEQLIQEIVKAEKQAVKVYKEAAEKARNPEKRQVKI----LEDEEKHIEWLKAASKQGNAEQFASLVQQILQDEQRHVEEIEKKN------
5PROSPECT23dt5A0.1260.9490.772threading_5RLKAIEDRLEKFYIPLIKAF-SSYVYTAQTEDEIETIITAGNNLLRVLPHFKFKKIAGSANWTFYAKEDFEQWKEALD-----VLWEEFLEVLKEYYTLSGTEISLPEKPDWLIGYK
6PPA-I2kkpA0.1010.8460.999threading_6IT------VEQWLNRWLTDYAKPHLRQSTWESYETVLRLHVIPTLGSIPLKK------------LQPADIQRLYASKLESGLVRYIHVVLHEAMSQARESGLLLQNPTEAAKPPRHP
7HHPRED-l1k19_A0.1210.7780.585threading_7INLDEILANKRLLVAYVNCVM-----ERGKCSEGKELKEHLQD--------AIENGCKKCT-----ENQEKGAYRVIEHL----IKNEIEIELTAKYDPTG---NWRKKYEDVIPE-
8HHPRED-g2oss_A0.1310.8460.537threading_8TSNKRQTNQLQYLRVVLKTLWKHQFAVKLNLPDYYKIMGTIKKRLENNYYWNA---------QECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN--ELPTEE-------
9SP31h75a0.2310.5560.657threading_9---------------MITIY------TRNDCVQCHATKRAMENR--GFDFEM---------INVDRPEAAEALRAQ----GFRQL---PVVIAPDMINRLHPAP-------------
10SAM-T993iamC0.2080.4100.843threading_10----------------VPLFCSEKHLSPDICPVGALLDLTARFRARNWEMEETPTTCALCPVGC-----------------------------------------------------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.419 to 1hzdA
SCOP code=c.14.1.3
TM-score=0.796 to 1ltqA
SCOP code=c.108.1.9
TM-score=0.503 to 1z0jB
SCOP code=a.2.19.1
TM-score=0.525 to 1yd8G
SCOP code=a.7.8.1
TM-score=0.624 to 1x8yA
SCOP code=h.1.20.1