Template-based Modeling Results for YDIT_ECOLI

Submitted Primary Sequence

>Length 97
MSQNATVNVDIKLGVNKFHVDEGHPHIILAENPDINEFHKLMKACPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSQNATVNVDIKLGVNKFHVDEGHPHIILAENPDINEFHKLMKACPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG
CCCCCEECHHHHHCCCCEECCCCCCCEEECCCCCHHHCCHHHHHCCCEEEEECCCCCEEEECCCCCCCCCCEEECCCCCCEEECCCCCCCCCCEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSQNATVNVDIKLGVNKFHVDEGHPHIILAENPDINEFHKLMKACPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG
5543120212220011202123221101123331023021003000000011233220200021012001010101332212020121221120224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSQNATVNVDIKLGVNKFHVDEGHPHIILAENPDINEFHKLMKACPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG
1	MUSTER	2gmhA	0.179	0.979	2.038	threading_1	PDGQISFDLLSSVASGTNHEHDQPAHLTLKDDSVPVNRGPEQRFCPAGVYEFVPLERLQINAQNCVHCKTCDIKDPS-QNINWVVPEGGGGPAY-NG
2	SPARKS	2gmha	0.179	0.979	3.429	threading_2	PDGQISFDLLSSVASGTNHEHDQPAHLTLKDDSVPVNRGPEQRFCPAGVYEFVPLERLQINAQNCVHCKTCDIKD-PSQNINWVVPEGGGGPAY-NG
3	PROSPECT2	1v87A	0.124	1.000	0.647	threading_3	GSSGSSGEPEQVIRKYTEELKVAPEMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHANGNKDGSLQCPSCKTIYGEKTGTQPWGKMEVFRSGPSSG
4	PPA-I	2fdnA	0.200	0.567	3.495	threading_4	---------------------------AYVINEACISCGACEPECPVNAISSGDD-RYVIDADTCIDCGACAGVCPVDAPVQA--------------
5	HHPRED-l	2gmh_A	0.179	0.979	2.524	threading_5	PKPDGQISFDLSVASGTNHEHDQPAHLTLKDDSVPVNDGPEQRFCPAGVYEFVPGFRLQINAQNCVHCKTCDIKDPS-QNINWVVPEGGGGPAYNG-
6	HHPRED-g	2gmh_A	0.177	0.990	8.080	threading_6	IEYPKPQISFDLLSSGTNHEHDQPAHLTLKDDSVPVNDGPEQRFCPAGVYEFVPLFRLQINAQNCVHCKTCDIK-DPSQNINWVVPEGGGGPAYNGM
7	SP3	2gmha	0.191	0.969	3.280	threading_7	PKPDGQISF-DLLSSGTNHEHDQPAHLTLKDDSVPVNRGPEQRFCPAGVYEFVPLERLQINAQNCVHCKTCDIKD-PSQNINWVVPEGGGGPAY-NG
8	SAM-T99	2vpzB	0.278	0.557	2.847	threading_8	--------------------------------CLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDA--RYLHPAG---------
9	MUSTER	1bqxA	0.157	0.722	1.019	threading_9	------------------------AYVI-TEPCIGTKCASCVEVCPVDCIHEGED-QYYIDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSFFKK-
10	SPARKS	1h98a	0.143	0.649	1.114	threading_10	-------------------------PHVICEPCIGVKDQSCVEVCPVECIYDGGD-QFYIHPEECIDCGACVPAC-PVNAIYEDVPEQGL-------

Predicted Tertiary Structure


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TM-score=0.592 to 1jb0C SCOP code=d.58.1.2	TM-score=0.329 to 2tmaA SCOP code=h.1.5.1	TM-score=0.568 to 1jb0C SCOP code=d.58.1.2	TM-score=0.793 to 1v87A SCOP code=g.44.1.1	TM-score=0.762 to 2fdnA SCOP code=d.58.1.1