Template-based Modeling Results for YDII_ECOLI

Submitted Primary Sequence

>Length 136
MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL
CCCCCCCCHHHHHHHCCCHHHHHCCCEEEEEECCEEEEEEECCHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL
5533331113001210203001103020120133101010102331122100000000000020000000100033332000010100001114312010101002212200001010113522100101000012
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL
1	MUSTER	1vi8B	0.993	1.000	3.183	threading_1	LIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL
2	SPARKS	1o0ia	0.496	0.978	3.775	threading_2	-LWKKTFTLENLNQLCSNSAVSHLGIEISAFGEDWIEAT--PVDHRTQPFGVLHGGVSVALAETIGSLAGSLCLEEGKTVVGLDINANHLRPVRSGKVTARATPINLGRNIQVWQIDIRTEENKLCCVSRLTLSVI
3	PROSPECT2	1vh9A	0.588	1.000	2.574	threading_3	LIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVL
4	PPA-I	1vh9A	0.588	1.000	4.362	threading_4	LIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVL
5	HHPRED-l	1vh5_A	0.993	0.993	3.238	threading_5	LIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAI-
6	HHPRED-g	1vh9_A	0.588	1.000	3.229	threading_6	LIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVL
7	SP3	1o0ia	0.474	0.978	3.740	threading_7	-LWKKTFTLENLNQLCSNSAVSHLGIEISAFGEDW--IEATPVDHRTQPFGVLHGGVSVALAETIGSLAGSLCLEEGKTVVGLDINANHLRPVRSGKVTARATPINLGRNIQVWQIDIRTEENKLCCVSRLTLSVI
8	SAM-T99	1vi8B	0.993	1.000	4.453	threading_8	LIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL
9	MUSTER	1vh9A	0.588	1.000	3.134	threading_9	LIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVL
10	SPARKS	3s4ka	0.311	0.875	3.551	threading_10	-----------------VPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSGGSVVGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNL

Predicted Tertiary Structure


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TM-score=0.978 to 1vh9A TM-score=0.996 to native SCOP code=d.38.1.5	TM-score=0.991 to 1vh9A TM-score=0.988 to native SCOP code=d.38.1.5	TM-score=0.976 to 1sc0A TM-score=0.970 to native SCOP code=d.38.1.5	TM-score=0.991 to 1vh9A TM-score=0.988 to native SCOP code=d.38.1.5	TM-score=0.991 to 1vh9A TM-score=0.988 to native SCOP code=d.38.1.5

Experimental Structure

Download 1vh5A

SCOP code=d.38.1.5