Template-based Modeling Results for YDHR_ECOLI

Submitted Primary Sequence

>Length 101
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
42100101121301102101210220021024130000000021342421100000121300210023001103411021010100101221121232424
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
1	MUSTER	1wd6A	0.979	0.950	4.056	threading_1	-ATLLQLHFAFNGPFG-DAAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA---
2	SPARKS	1wd6a	0.979	0.950	4.235	threading_2	-ATLLQLHFAFNGPFGDAAE-QLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA---
3	PROSPECT2	1wd6A	1.000	0.950	1.756	threading_3	-ATLLQLHFAFNGPFGDA-AEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQ---A
4	PPA-I	1wd6A	0.979	0.950	6.449	threading_4	-ATLLQLHFAFNGPFG-DAAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA---
5	HHPRED-l	2asy_A	1.000	0.990	8.247	threading_5	MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKL-
6	HHPRED-g	2asy_A	1.000	1.000	6.748	threading_6	MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
7	SP3	1wd6a	0.979	0.950	4.272	threading_7	-ATLLQLHFAFNGPFG-DAAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA---
8	SAM-T99	1wd6A	0.969	0.950	6.231	threading_8	-ATLLQLHFAFNGPF-GDAAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA---
9	MUSTER	1x7vC	0.196	0.911	1.239	threading_9	PLTLIATITAAPG-HAEALERELRALVAPSRAEAGCLQYDLHQDRHDSHLFYIEQWRDDAALERHQNEHFLRFSRG-NEAL-LQNVKIDQ-LY-----RLA
10	SPARKS	3bn7a	0.112	0.881	0.826	threading_10	-GLFHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQLHVGVPAATEKRDVSELVFKSVEDQKRYRPLLQKFVADCSHLWSKVVVYDSSV-----------

Predicted Tertiary Structure


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TM-score=0.948 to 1wd6A TM-score=0.971 to native SCOP code=d.58.4.12	TM-score=0.945 to 1wd6A TM-score=0.968 to native SCOP code=d.58.4.12	TM-score=0.924 to 1wd6A TM-score=0.947 to native SCOP code=d.58.4.12	TM-score=0.932 to 1wd6A TM-score=0.955 to native SCOP code=d.58.4.12	TM-score=0.948 to 1wd6A TM-score=0.971 to native SCOP code=d.58.4.12

Experimental Structure

Download 1wd6A

SCOP code=d.58.4.12