Template-based Modeling Results for YDEI_ECOLI

Submitted Primary Sequence

>Length 130
MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHDGASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAPAVVRVTHLQK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHDGASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAPAVVRVTHLQK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEHHHHHCCCCCCEEEEEEEEEEEECCCEEEEECCCCCEEEEECHHHCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHDGASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAPAVVRVTHLQK
4311010000000000000223221333212222221221240233122100320321332010002010012125120102153120101022210222303341100010102252221102012135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHDGASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAPAVVRVTHLQK
1	MUSTER	1nnxA	0.348	0.708	3.051	threading_1	-------------------------------------QGGFSGPSGS-VTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRK
2	SPARKS	1nnxa	0.348	0.708	3.438	threading_2	-------------------------------------QGGFSGPS-GSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRK
3	PROSPECT2	1nnxA	0.359	0.708	1.832	threading_3	---------------------QGGFSGPSGSVT-----------------TVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRK
4	PPA-I	1nnxA	0.348	0.708	4.504	threading_4	-------------------------------------QGGFSGPSGS-VTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRK
5	HHPRED-l	1nnx_A	0.352	0.677	7.688	threading_5	--------------------------------------GGF-GP--GSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIR-
6	HHPRED-g	1nnx_A	0.360	0.685	7.388	threading_6	--------------------------------------GGF-GP-G-SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRK
7	SP3	1nnxa	0.348	0.708	3.200	threading_7	-------------------------------------QGGFSGPS-GSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRK
8	SAM-T99	1nnxA	0.348	0.708	6.099	threading_8	-------------------------------------QGGFSGPS-GSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRK
9	MUSTER	3bjuA1	0.074	0.931	0.824	threading_9	VDPNQYYKIRSQAIHQLKVNGEDPYPHKHVDISLTDFIQKYSHLQPGDHL---------TDITLKVAGRIHAKRASGFYDLRGEGVKLQVMANSRNYKSNKLRRGDIIGVQGNPGKKKGELSIIPYEITL
10	SPARKS	1e1oa1	0.133	0.923	0.941	threading_10	--AIDFNDELRNRREKLAALRQQGVAFPNDDHTSDQLHEEFDAKD------NQELES--LNIEVSVAGRMMTRRIMGFVTLQDVGGRIQLYVARDSLPEKKWDLGDIIGARGTLFKTQTGLSIHCTELRL

Predicted Tertiary Structure


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TM-score=0.824 to 1nnxA SCOP code=b.40.10.1	TM-score=0.835 to 1nnxA SCOP code=b.40.10.1	TM-score=0.835 to 1nnxA SCOP code=b.40.10.1	TM-score=0.819 to 1nnxA SCOP code=b.40.10.1	TM-score=0.824 to 1nnxA SCOP code=b.40.10.1