Template-based Modeling Results for YDDM_ECOLI


  Submitted Primary Sequence

>Length 94
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
5522221200100220033140203200310310220023012132212230001002002011200000120110120233132231232235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
1MUSTER3cecA0.2610.9363.090threading_1VR---PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQSHEYEQVTLV---
2SPARKS3ceca0.2610.9363.340threading_2---VRPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQSHEYEQVTLV---
3PROSPECT23cecA0.2560.9571.614threading_3VR---PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQS-HKEEYEQVTLV
4PPA-I3cecA0.2560.9574.088threading_4---VRPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQSH-KEEYEQVTLV
5HHPRED-l2ict_A1.0000.9263.179threading_5---ANHPRPGDIIQESLDELNVSLREFARA-EIAPSTASRLLTGKAALTPE-AIKLSVVIGSSPQ-WLNLQNAWSLAEAEKTVDVSRLRRLVT-
6HHPRED-g2eby_A0.3110.9573.379threading_6----KPTTPGDILYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEVENNMELGRIETVAEY
7SP33ceca0.2610.9363.645threading_7VR---PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQSHKYEQVTLV---
8SAM-T993trbA0.2610.9363.625threading_8-----PIHPGEILAEELGFLDKSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFWLNLQDAYDIKALKKS-GKKIEKEVTPY
9MUSTER3trbA0.2640.9262.979threading_9----RPIHPGEILAEELGFLDKSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFWLNLQDAYDIKALKKSGKEKEVTPY---
10SPARKS3trba0.2640.9263.164threading_10----RPIHPGEILAEELGFLDKSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFWLNLQDAYDIKALKKSGKEKEVTPY---

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.778 to 2ictA
SCOP code=a.35.1.3
TM-score=0.757 to 2ictA
SCOP code=a.35.1.3
TM-score=0.786 to 2ictA
SCOP code=a.35.1.3
TM-score=0.774 to 2ictA
SCOP code=a.35.1.3
TM-score=0.758 to 2ictA
SCOP code=a.35.1.3