Template-based Modeling Results for YDCZ_ECOLI

Submitted Primary Sequence

>Length 149
MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLVGIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAVLVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLVGIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAVLVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF
CCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEECCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLVGIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAVLVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF
54211000010010000001200112012212201200112011000000001113211100020000020021010000001000000002100000000000002000000010040220212210020000000000110002234
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLVGIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAVLVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF
1	HHPRED-l	3b5d_A	0.141	0.664	1.523	threading_1	-----YLGGAILAEVI--------GT--------------------------TLMKFSE-----GF-TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWG-FFG---QRLDPAIIGMMLICAGVLIINLLS-
2	HHPRED-g	3b5d_A	0.152	0.664	1.553	threading_2	-----YLGGAILAEVI--GTTL----MKF--S------------------------EG-------FT-RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWG-FFG---QRLLPAIIGMMLICAGVLIINLLS-
3	HHPRED-l	2i68_A	0.205	0.523	1.141	threading_3	---YIYLGGAILAEVIGTTL--M------------------------------------------------VGTIICYCASFWLLAQTLA-----IAYAIWSGV--GIVLISLLSWG-FFG--------AIIGMMLICAGVLIINLL--
4	HHPRED-g	2i68_A	0.179	0.523	1.552	threading_4	---YIYLGGAILAEVIGTT--LM-----------VGTIICYCAS-------------------------------------FWLLAQTLA-----IAYAIWSGV--GIVLISLLSWG-FFG--------AIIGMMLICAGVLIINLL--
5	HHPRED-g	1pw4_A	0.104	0.899	1.117	threading_5	FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGRGATGVFFMTLVT--IATIVYWMN-------PAGNPTVDMICMIVIGPVMLIGLHLAPKAGTAAGFGGSVAASAIVGYTVDFFGWDG----GFM--VMIGGSILAVIVVMKRRHE
6	MUSTER	3zuxA	0.201	0.933	0.847	threading_6	MSIVKMVLLPIVLGLI--VH-KVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAK--WTGLPY--AQKALTIEVGSGLAAALAAAHFA--AAPVVAVPGALFSVWHNISGSLLATAKA-
7	SPARKS	1apy\.1	0.172	0.859	0.775	threading_7	------------SPLPLVVNTWPFKNATEAAWRALASGGS-ALDAVESGCAMCEREQGSVGFGTLDAMI-----MDGTTMD---VGAVGDLRRIKNAIGVARKVLEHLVGESATTFAQSMGFINEDSASQALHSDWLARNCQPNYWRNV
8	PROSPECT2	3bniA	0.125	0.966	0.915	threading_8	RSAERLTRILDACADLLDEVALSTRAVALRADVMADALAQRNLERYAERVTERLTEAGDGGWRGALDTVEYLAMFGRVAERLTELLSGYLGRRPDDDLRRVFLVAVETADTLVQLAFRVAPDGDEKIIEEARELLRAYLGRVL-----D
9	PPA-I	3bniA	0.116	0.866	0.787	threading_9	FGNKRQMADALAQRNLERYAERVTERLTEAGDGWRGALDTVLDEYLAMKRTAPGFSLIDFGRVAERLTELLSGYLG---------------RRPDDDLRRVFLVAVETADTLVQLAFRVAPDGDEKIIEEARELLRAYLGRVLD-----
10	HHPRED-l	1pw4_A	0.135	0.893	0.411	threading_10	LPNKLLWYIAILYEYAGIPGTLLCGWMSDKVFRGRGATGVFF---MTLVTIATIVYWMN------PAGNPTVDMICMIVIGFVMLIGLHAAPAAGTAALFGGSVAASAIVGYTVDFFGWDG----GF--MVMIGGSILAVILVMKRRH-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.655 to 1uiyA SCOP code=c.14.1.3	TM-score=0.496 to 1xeqA SCOP code=a.16.1.1	TM-score=0.463 to 1fyjA SCOP code=a.16.1.3	TM-score=0.436 to 1sxjC SCOP code=a.80.1.1	TM-score=0.417 to 1rtwB SCOP code=a.132.1.3