Template-based Modeling Results for YBJM_ECOLI

Submitted Primary Sequence

>Length 125
MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ
55443310000000000000000111213101321111100000000000000001322100200000000000000001001022210020000000000000000000000011032324334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ
1	MUSTER	2ksfA	0.168	0.808	1.204	threading_1	MVQIQGSVVAAALSAVITLIAMQWLMAFDAANLV--------MLYLLGVVVVALFYGRW--------SVVATVINVVSFDLFFIAPRTL-SDVQYLLTFAVMLTVGLVIGNLTAGV-------YQ
2	SPARKS	2ksfa	0.159	0.856	1.300	threading_2	MVQIQGSVVAAALSAVITLIAMQWLMAFDAANLV--------MLYLLGVVVVALFYGRW-------PSVVATVINVVSFDLFFIAPRGTLA--VSDVQYLLTFAVMLTVGLVIGNLTAGVRYQA-
3	PPA-I	2ksfA	0.152	0.840	1.420	threading_3	MVQIQGSVVAAALSAVITLIAMQWLMAFDAANLV--------MLYLLGVVVVALFYGRW-------PSVVATVINVVSFDLFFIAPRGTLADVQYLLTFAVMLTVGLVIGNLTAGVRYQA-----
4	MUSTER	1c17M	0.178	0.944	0.863	threading_4	-HGKSKLIAPLALTIFVWVFLMNLMDHVLGALRVVPSADMALGVFILILFYSILLSKPVSLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLS------
5	SPARKS	3lr2a	0.157	0.920	0.919	threading_5	--HTTPWENFMNSFMQGL--------SSMPGFTASQLDDMSTIAQSMVQSIQSLAAQGRNKLQALNMAFASSMAEIAASEEGGGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQ
6	PROSPECT2	2iu5A	0.088	1.000	0.848	threading_6	MEKSIITQKIIAKAFLLSWIFENDFAELINDNSDYYGWQNELLLLLRQIFYQKIFVIDKNFEHFFLIQWENLLDKVIFDQEKKSDYHWSDLEKSFICRYNAAAICAITRESIIVNLLLAQIKIFE
7	PPA-I	1pw4A2	0.106	0.984	0.875	threading_7	LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM--NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTA
8	HHPRED-l	3o0r_B	0.130	0.984	0.881	threading_8	RGRKTAMV-LMTGLIGLALLFLFSFYNENLTRDKVVHLWVEVWELIMGAILAFVLVKITGVDREVIEKWLMALISGIGHHYFWIGVPGYWLWLGSVFSALEPLPFFAMVLFAFNTINRRRRDYP-
9	HHPRED-g	2ksf_A	0.171	0.840	0.927	threading_9	MVQIQGSVVAAALSAVITLIAMQWLMAF-------D-AANLVMLYLLGVVVVALFYGRW-------PSVVATVINVVSFDLFFIAPRTLASDVQYLLTFAVMLTVG----LVIGNLTAGVRYQA-
10	SP3	2ksfa	0.163	0.832	0.760	threading_10	MVQIQGSVVAAALSAVITLIAMQWLMAF-------DAANL-VMLYLLGVVVVALFYGRW----P---SVVATVINVVSFDLFFIAPRTLVSDVQYLLTFAVMLTVGLVIGNLTAGV------RYQ

Predicted Tertiary Structure


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TM-score=0.631 to 1dowA SCOP code=a.24.9.1	TM-score=0.636 to 1dowA SCOP code=a.24.9.1	TM-score=0.618 to 2hujA SCOP code=a.24.26.1	TM-score=0.712 to 1c17M SCOP code=f.18.1.1	TM-score=0.648 to 2j0oA SCOP code=a.250.1.1