Template-based Modeling Results for YBII_ECOLI

Submitted Primary Sequence

>Length 88
MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCHHHCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
5431212231012102210220012012313413023003303230131123202101001102212221332131222421332225
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
1	MUSTER	2kgoA	1.000	1.000	4.613	threading_1	MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
2	SPARKS	2kgoa	1.000	1.000	4.722	threading_2	MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
3	PROSPECT2	2kgoA	1.000	1.000	1.743	threading_3	MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
4	PPA-I	2kgoA	1.000	1.000	8.256	threading_4	MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
5	HHPRED-l	2kgo_A	1.000	0.989	6.769	threading_5	MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQL-
6	HHPRED-g	2kgo_A	1.000	1.000	6.525	threading_6	MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
7	SP3	2kgoa	1.000	1.000	4.539	threading_7	MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
8	SAM-T99	2kgoA	1.000	1.000	4.285	threading_8	MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
9	MUSTER	2kq9A	0.288	0.750	1.293	threading_9	RASERSNDEVLLGQVGQDELRAIDAALARIASG-TFGTCVKCGKRISEDRLKAVPYTPFCQECAAAL---------------------
10	SPARKS	1tjla	0.222	0.818	2.438	threading_10	EEFSL---ELRNRDRERKLIKKIEKTLKKVEDE-DFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.382 to 1x64A SCOP code=g.39.1.3	TM-score=0.374 to 2g80A SCOP code=c.108.1.22	TM-score=0.382 to 1x64A SCOP code=g.39.1.3	TM-score=0.382 to 1x64A SCOP code=g.39.1.3	TM-score=0.382 to 1x64A SCOP code=g.39.1.3