Template-based Modeling Results for YBGE_ECOLI

Submitted Primary Sequence

>Length 97
MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
4531011112101310020000000000000010001100231130200000000000000001001121120000000000000000000000112
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
1	MUSTER	2ahzA	0.158	0.979	1.227	threading_1	MLSFLLTLKRMLRARAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDG--FSPQTDFGKIFTILYIFIGIGLVFGFIHKL
2	SPARKS	2ahya	0.146	0.990	1.174	threading_2	MLSFLLTLKRMLRACLRKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDG-NFSPQTDFGKIFTILYIFIGIGLVFGFIHKL
3	PPA-I	2ahzA	0.156	0.990	1.334	threading_3	MLSFLLTLKRMLRARAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDG-NFSPQTDFGKIFTILYIFIGIGLVFGFIHKL
4	MUSTER	2qvoA	0.119	0.866	0.898	threading_4	------RIKLLFKEKALEILMTIYYESLGGNDVY-IQYIASKVNSPHSYVWLIIKKFEEAKMV----CELRTKIIRL--TDKGQKIAQQIKSIIDIM
5	SPARKS	2qvoa	0.115	0.897	0.963	threading_5	------RIKLLFKEKALEILMTIYYESLGGNDVY-IQYIASKVNSPHSYVWLIIKKFEEAKMVE---CELEGRTKIIRLTDKGQKIAQQIKSIIDIM
6	PROSPECT2	2h7oA2	0.121	0.938	0.663	threading_6	WADVARQSLQRFDSTQYTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQ------LGRSSLMDEHLVEQREKLRELTTIAERLNRLEREW
7	PPA-I	2x2vA	0.147	0.701	0.980	threading_7	---------AFLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAE----------------AVPIIAIVISLLILF----
8	HHPRED-l	2gv1_A	0.213	0.485	0.932	threading_8	---------------------------------------MSK----------VCIIAWVYGRVQGVGFRYTTQYEAKRLGEEGQVEKLMQWLKSGG-
9	HHPRED-g	3eff_K	0.145	0.856	0.825	threading_9	---------SALHWRAAGTVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALW--WSVETATTVGYDLYPVTLWGRLVAVVV---MVAGITSFGLVT
10	SP3	2ahya	0.151	0.959	0.734	threading_10	LLTLKRMLRACLRA--WKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTV--GDGFSPQTDFGKIFTILYIFIGIGLVFGFIHKL

Predicted Tertiary Structure


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TM-score=0.631 to 1xl6A SCOP code=b.1.18.16	TM-score=0.625 to 1xl6A SCOP code=b.1.18.16	TM-score=0.645 to 1xl6A SCOP code=b.1.18.16	TM-score=0.738 to 1stzA SCOP code=a.4.5.51	TM-score=0.647 to 1xl6A SCOP code=b.1.18.16