Template-based Modeling Results for YBGC_ECOLI

Submitted Primary Sequence

>Length 134
MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ
CCCCEEEEEEEECHHHCCCCCEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCCCEEEEEEEEEEECCEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ
55422020102011320121000000000100120012003313111310133400000010101020204131101010102113311010102002343100020201000012342323202420233145
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ
1	MUSTER	1s5uE	1.000	1.000	4.343	threading_1	MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ
2	SPARKS	1s5ua	1.000	0.963	4.027	threading_2	---TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF--
3	PROSPECT2	2xemA	0.201	1.000	2.800	threading_3	HHHDSYVHRHVVTFDETNLVGNVYFAHYLHWQGHCREHFLADHAPGVMAALADGLALVTVDCHADFYAEGSAFDEVEVRMMLDRLDGHRIAMSFDYVRGPPTLLAQGRQTVACMRRAGHEPVEVPAELRRALSR
4	PPA-I	1s5uE	1.000	1.000	5.397	threading_4	MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ
5	HHPRED-l	1s5u_A	1.000	0.963	2.932	threading_5	---TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF--
6	HHPRED-g	1s5u_A	1.000	0.963	2.622	threading_6	---TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF--
7	SP3	2xema	0.211	0.993	3.763	threading_7	MPDS-YVHRHVVTFDETNLVGNVYFAHYLHWQGHCREHFLADHAPGVMAALADGLALVTVDCHADFYAEGSAFDEVEVRMMLDRLDGHRIAMSFDYVRGPPTLLAQGRQTVACMRRAGLEPVEVPAELRRALSR
8	SAM-T99	1s5uE	1.000	1.000	4.513	threading_8	MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ
9	MUSTER	2egiC	0.254	0.940	3.902	threading_9	----PFIYRRRVQFYETDAQGIVHHSNYFRYFEEARGEFLRSKGFPYSKMRDMGLEVVLLNAYCEYKKPLFYDDVFEVHLNLEELSRFTFTFSYIVFK-EDIAVAKANTKHCMVK--NGKIVSIPKEVLEVLK-
10	SPARKS	2xema	0.211	0.993	3.800	threading_10	MPDS-YVHRHVVTFDETNLVGNVYFAHYLHWQGHCREHFLADHAPGVMAALADGLALVTVDCHADFYAEGSAFDEVEVRMMLDRLDGHRIAMSFDYVRGPPTLLAQGRQTVACMRRAGHEPVEVPAELRRALSR

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.990 to 1s5uE TM-score=0.998 to native SCOP code=d.38.1.1	TM-score=0.990 to 1s5uE TM-score=0.998 to native SCOP code=d.38.1.1	TM-score=0.905 to 1s5uE TM-score=0.912 to native SCOP code=d.38.1.1	TM-score=0.867 to 1s5uE TM-score=0.870 to native SCOP code=d.38.1.1	TM-score=0.990 to 1s5uE TM-score=0.998 to native SCOP code=d.38.1.1

Experimental Structure

Download 1s5uE

SCOP code=d.38.1.1