Template-based Modeling Results for YBDF_ECOLI


  Submitted Primary Sequence

>Length 122
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG
CCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCEEEEEEEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG
45232013101300251330211122132000010000000000124222000020123102200321221210210123100000013312321022001200200042013311431434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG
1MUSTER2fkiA0.2120.9673.891threading_1MT----ISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
2SPARKS2fkia0.2120.9674.167threading_2MT----ISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
3PROSPECT22fkiA0.2120.9672.270threading_3MT----ISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
4PPA-I2fkiA0.2120.9676.773threading_4MT----ISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
5HHPRED-l2fki_A0.2140.9597.055threading_5MTISE----LLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQ-
6HHPRED-g2fki_A0.2030.9675.910threading_6----MTISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
7SP32fkia0.2120.9674.434threading_7MT----ISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
8SAM-T992kfpA0.2820.8444.920threading_8----MNRQQFIDYAQKKYDTKPDHPWFPDYAVFRHNDKWYALLMDIPAVDVIDLKVQPELVGSLRKK-PGIYPAYHMNKEHWITVLLNGPLGAKEIHSLIEDSFQLTR--------------
9MUSTER2kfpA0.2730.9022.520threading_9MN----RQQFIDYAQKKYDTKPDHPWFPDYAVFRHNDKWYALLMDIKRVDVIDLKVQPELVGSLRKK-PGIYPAYHMNKEHWITVLLNGPLGAKEIHSLIEDSFQLTRLE-------HHHHH
10SPARKS2a1va0.3220.9674.005threading_10QT----VDDLRSVCDELPHSLETFPFDDETLVFKVGYRMYALTDITQDPLRLSLKVDPERGEELRQAHPSIAPGYHLNKKHWVTVTLDGTVPAELLGELLRGSYLLVTKKFTKAERKELGPD

  Predicted Tertiary Structure

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TM-score=0.973 to 2fkiA
SCOP code=d.198.3.1
TM-score=0.413 to 1nzyB
SCOP code=c.14.1.3
TM-score=0.974 to 2fkiA
SCOP code=d.198.3.1
TM-score=0.973 to 2fkiA
SCOP code=d.198.3.1
TM-score=0.973 to 2fkiA
SCOP code=d.198.3.1