Template-based Modeling Results for YBCO_ECOLI

Submitted Primary Sequence

>Length 96
MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
CCHHHHHHCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
453112213433010101101222131000010212110121121121000000000011014223213211021011200010021113222244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
1	MUSTER	3g27A	0.863	0.833	3.849	threading_1	----RKAARGRECQVRIPGVCNGNPETSVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVD-AGYAKECALEGARTQVIWLKEGVI--
2	SPARKS	3g27a	0.988	0.833	4.503	threading_2	----RKAARGRECQVRIPGVCNGNPETSVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGA-RTQVIWLKEGVI--
3	PROSPECT2	3g27A	0.963	0.833	1.463	threading_3	----RKAARGRECQVRIPGVCNGNPETSVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGA-RTQVIWLKEG--VI
4	PPA-I	3g27A	0.863	0.833	5.691	threading_4	----RKAARGRECQVRIPGVCNGNPETSVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVD-AGYAKECALEGARTQVIWLKEGVI--
5	HHPRED-l	3g27_A	1.000	0.833	8.428	threading_5	----RKAARGRECQVRIPGVCNGNPETSVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEG-ARTQVIWLKEGVI--
6	HHPRED-g	3g27_A	1.000	0.833	8.111	threading_6	----RKAARGRECQVRIPGVCNGNPETSVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEG-ARTQVIWLKEGVI--
7	SP3	3g27a	0.988	0.833	2.249	threading_7	----RKAARGRECQVRIPGVCNGNPETSVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGA-RTQVIWLKEGVI--
8	SAM-T99	3g27A	0.975	0.833	5.021	threading_8	----RKAARGRECQVRIPGVCNGNPETSVLAHI---------RKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGA-RTQVIWLKEGVI--
9	MUSTER	3pesA	0.163	0.833	0.806	threading_9	LAEFEDRVAGIPCLIVVTYWEPYVPA-------KVSGPPEYCYPAEGGCGEWE------VRDRRGRPAPWLERKLTEAERERIDQAVFDREGR---
10	SPARKS	1pch_	0.155	0.740	0.822	threading_10	ASVLAKEASKFSSNITI--IANE---KQGNL-KSIMNVMAMAIKTGTEITIQA------------DGND-------ADQAIQAIKQTMIDTALIQG

Predicted Tertiary Structure


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TM-score=0.489 to 2d2sA TM-score=0.988 to native SCOP code=a.118.17.2	TM-score=0.491 to 2d2sA TM-score=0.978 to native SCOP code=a.118.17.2	TM-score=0.491 to 2d2sA TM-score=0.978 to native SCOP code=a.118.17.2	TM-score=0.502 to 1g6uA TM-score=0.980 to native SCOP code=k.9.1.1	TM-score=0.489 to 2d2sA TM-score=0.988 to native SCOP code=a.118.17.2

Experimental Structure

Download 3g27A

SCOP code=a.118.17.2