Template-based Modeling Results for YBAN_ECOLI

Submitted Primary Sequence

>Length 125
MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDEKQEKH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDEKQEKH
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDEKQEKH
43321110000000000000100110110000000000112102201100121110020031023222023001010000000000000000210001000000000000000102223445458
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDEKQEKH
1	PPA-I	1q8cA	0.147	0.928	1.104	threading_1	-----LTRTQRRIAVVEFIFSLLFFLPKEAEVIQADFLEYDTKLIVKAFSENIFSFQKKIEEQQLKNQLEIQTKIDLLTTAVVLCALSEQKAHNTDKPLLISEALLIMDHY----SQGAEKKQTH
2	PPA-I	2ahzA	0.113	0.776	1.068	threading_2	---MLSFLLTLKRMLRACLRAWKDKEFQVLFVLTILTLIS--GTIFYSTVEGLRPIDALYFSVVTLTTVTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP-----------------------
3	PPA-I	2eh3A	0.134	0.896	1.018	threading_3	HKKIISLFEENKEKTPEELLEFLEVLYREKKVVYIFLFDLLCSEKFRNIYFEEDAKRRFEKFLEKHFPSKAEILSEIILGFLRQLILHYVIKEERELPFLKEKLREGLKLIF-------------
4	MUSTER	1q8cA	0.162	0.888	0.873	threading_4	TQRRIAVVEFIFSLLF--------FLPKEAEVIQADFLEYDTKERLNEWQKL--SFQKKIEEQQLKNQLEIQTKIDLLTTAVVLCALSEQKAHNTDKPLLISEALLIMDHY----SQGAEKKQTH
5	SPARKS	3pspa	0.116	0.968	0.995	threading_5	IKTPAYDIVRLIVKKLPYSSDIKDYIITLTMLTVRILVNCFNNENWGVKLLESNVYKSIFETIDFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKY----GPLEEYQEC
6	PROSPECT2	2w53A	0.088	1.000	0.835	threading_6	EDTLAAIVERVHLPFMQELERTSTDQRDTPVVMIHSFIELSEDERLRKTMESTEMQQAGFRDALDREGADPKIAARMLHATVLGVLHGAMVEPELMLKRDGMLALDMTLAAYVKDGVFVPGTVPE
7	PPA-I	2np5A	0.118	0.952	0.963	threading_7	LRTLVDKLLARLSEVERALFAASQLLPLDEAHVAAFAVRAATSPSLAEIRRKTTIRTGLSAVLIGIGTPEAETRAALLLATVDGLALDAIGSPALYPPEYLEHALDIQIGILQGADVVP------
8	HHPRED-l	1v54_L	0.217	0.368	0.574	threading_8	----------------------------------------------------HYEEGP-----GKNIPFSVENKWRLLAMMTLFFGSGFAA-PFFIVRHQLLK----------------K-----
9	HHPRED-g	3o7q_A	0.095	0.928	0.765	threading_9	LSYKAGIITGLFLYALGAALFWPAEIMNYTLFLVGLFIIAAGLG------CLETAANPFVTVLGPESS---GHFRLNLAQTFNSFGAIISLILSSVQTPIIVAIVLLVAIMLTKFPALQSDNHSD
10	SP3	1q8ca	0.177	0.904	0.551	threading_10	TQRRIAVVEFIFSL--------LFFLPKEAEVIQADFLEYDTKERLNEWQKLVKAFSENIFSFQKKNQLEIQTKIDLLTTAVVLCALSEQKAHNTDKPLLISEALLIMDHY----SQGAEKKQTH

Predicted Tertiary Structure


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TM-score=0.559 to 1hzdA SCOP code=c.14.1.3	TM-score=0.843 to 1q8cA SCOP code=a.79.1.2	TM-score=0.547 to 1pd3A SCOP code=a.30.3.1	TM-score=0.627 to 2id3A SCOP code=a.4.1.9	TM-score=0.796 to 1q8cA SCOP code=a.79.1.2