Template-based Modeling Results for YBAB_ECOLI

Submitted Primary Sequence

>Length 109
MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCEEEEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF
5423101021032023013103401331241202020231102010202310120201320133333001200110022003302311221012002103012224034
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF
1	MUSTER	1pugA	1.000	0.862	3.554	threading_1	----------MKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG-----
2	SPARKS	1ybxa	0.310	0.798	3.146	threading_2	------INNLVKQAQKQR--DERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVELQDLILAAVNEALRKADEV-TAEISKIT-------------
3	PROSPECT2	1ybxA	0.322	0.798	1.537	threading_3	I------NNLVKQAQ--KQRDERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVELQDLILAAVNEALRKADEVTAEISKI--------------T
4	PPA-I	1pugA	1.000	0.862	7.222	threading_4	----------MKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG-----
5	HHPRED-l	1j8b_A	0.880	0.761	6.527	threading_5	------LGGL-KQAQQ-QEK----QEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSL-EDDKE-LEDLIAAAFNDAVRRAEELQKEK-ASVTAG-----------
6	HHPRED-g	1j8b_A	0.880	0.761	5.918	threading_6	------LGGL-KQAQQ-QEK----QEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSL-EDDKE-LEDLIAAAFNDAVRRAEELQKEK-ASVTAG-----------
7	SP3	1ybxa	0.310	0.798	3.164	threading_7	------INNLVKQAQKQR--DERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVELQDLILAAVNEALRKADEV-TAEISKIT-------------
8	SAM-T99	1pugA	1.000	0.862	5.165	threading_8	----------MKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG-----
9	MUSTER	1ybxB	0.318	0.807	2.795	threading_9	-----NINNLVKQAQKQR--DERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVELQDLILAAVNEALRKADEVTAEISKIT--------------
10	SPARKS	1j8ba	0.682	0.780	3.032	threading_10	----------LGGLKQAQQQEKQKQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSL--EDDKELEDLIAAAFNDAVRRAEELQKEKAS-VTAG-----------

Predicted Tertiary Structure


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TM-score=0.922 to 1pugA TM-score=0.990 to native SCOP code=d.222.1.1	TM-score=0.922 to 1pugA TM-score=0.990 to native SCOP code=d.222.1.1	TM-score=0.657 to 1pugA TM-score=0.698 to native SCOP code=d.222.1.1	TM-score=0.677 to 1pugA TM-score=0.720 to native SCOP code=d.222.1.1	TM-score=0.922 to 1pugA TM-score=0.990 to native SCOP code=d.222.1.1

Experimental Structure

Download 1pugA

SCOP code=d.222.1.1