Template-based Modeling Results for YBAA_ECOLI


  Submitted Primary Sequence

>Length 117
MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEECCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
442010000001231131022002200300330000100100032033131110210141333120000002011330111003202203213311320101020001100111244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
1MUSTER2okqA1.0001.0005.156threading_1MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
2SPARKS2okqa1.0001.0005.913threading_2MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
3PROSPECT22okqA1.0001.0002.924threading_3MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
4PPA-I2okqA1.0001.00013.965threading_4MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
5HHPRED-l2okq_A1.0000.99111.042threading_5MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIID-
6HHPRED-g2okq_A1.0001.0009.882threading_6MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
7SP32okqa1.0001.0005.332threading_7MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
8SAM-T992okqA1.0001.0008.022threading_8MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
9MUSTER1iujB0.1530.8381.046threading_9M-FVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVL----------------RPKNPGDPYVVMTLWESEEAFRAWTEPAFKEARSGTLPKEA-FLGPNRLE-AFEVVLDS
10SPARKS1x8da0.2050.7520.730threading_10MI-RKAFVMQVNPDAHEEYQRRHPELEAVLKSHGAHNYAIYL------------------DKARNLLFAMVEIES----EERWNAVASTDVMTDVMPANP-DNSPV-----SSELQE

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.952 to 2okqA
SCOP code=d.58.4.18
TM-score=0.456 to 1szoD
SCOP code=c.14.1.3
TM-score=0.952 to 2okqA
SCOP code=d.58.4.18
TM-score=0.952 to 2okqA
SCOP code=d.58.4.18
TM-score=0.952 to 2okqA
SCOP code=d.58.4.18