Template-based Modeling Results for YAJC_ECOLI


  Submitted Primary Sequence

>Length 110
MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVLPKGTMKAL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVLPKGTMKAL
CCCCCCHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHHHHHCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVLPKGTMKAL
54110020001111113221010000000000000011122223323313301330231110001100001002024322000101330101020200121123222424
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVLPKGTMKAL
1MUSTER2rddB1.0000.3361.011threading_1------------------SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDS-------------------------------------------------------
2PPA-I2rddB1.0000.3362.702threading_2------------------SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDS-------------------------------------------------------
3HHPRED-l2rdd_B1.0000.3363.364threading_3------------------SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDS-------------------------------------------------------
4HHPRED-g2rdd_B1.0000.3363.812threading_4------------------SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDS-------------------------------------------------------
5SAM-T992rddB1.0000.3362.110threading_5------------------SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDS-------------------------------------------------------
6PPA-I3qiiA0.2080.4361.411threading_6------------------------------------------------------EFQINEQVLACDCYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFS--------
7HHPRED-g2rdd_B0.0810.3361.927threading_7---------------------SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDS----------------------------------------------------
8PPA-I2wg6L0.1140.6361.301threading_8-------------------------------MKQLEDKVEELLSKNYHLENEVARLRS------APLLVGVVSDILEDGRVVVKSSTGPKFVVN---TSQYINEEELKPG
9PPA-I2vv5A10.2110.8181.199threading_9VGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRP--------------FRAGEYVDL-GGVAGTVLSVQ-IFSTTMRTADGKIIVIPNGKIIA----GNIINF
10PPA-I2equA0.1410.5821.102threading_10----------------------------------------------GSSGSSGFDFKAGEEVLARWTYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQDW

  Predicted Tertiary Structure

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TM-score=0.454 to 1kv4A
SCOP code=j.4.1.3
TM-score=0.454 to 1kv4A
SCOP code=j.4.1.3
TM-score=0.454 to 1kv4A
SCOP code=j.4.1.3
TM-score=0.454 to 1kv4A
SCOP code=j.4.1.3
TM-score=0.454 to 1kv4A
SCOP code=j.4.1.3