Template-based Modeling Results for YAFQ_ECOLI

Submitted Primary Sequence

>Length 92
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALFG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALFG
CCCEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCEEEEEECCCHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALFG
54212011133013003103443330310120010003322302221221303121300110002100000020233100001011122115
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALFG
1	MUSTER	1z8mA	0.307	0.957	4.513	threading_1	M--LKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKE-PLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSHSELF-
2	SPARKS	1z8ma	0.295	0.957	3.934	threading_2	--MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKK-EPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSHSELF-
3	PROSPECT2	2otrA	0.375	0.957	1.685	threading_3	M--LTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQ-PLAPKYKDHPLKGGLKDFRECHLKPDLLLVYQIQENTLFLVRLGSHSELF-
4	PPA-I	1z8mA	0.295	0.957	8.914	threading_4	--MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKK-EPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSHSELF-
5	HHPRED-l	1z8m_A	0.295	0.957	6.737	threading_5	--MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRK-KEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSHSELF-
6	HHPRED-g	1z8m_A	0.295	0.957	5.834	threading_6	--MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKK-EPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSHSELF-
7	SP3	1z8ma	0.307	0.957	3.890	threading_7	M--LKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKE-PLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSHSELF-
8	SAM-T99	2otrA	0.352	0.957	4.833	threading_8	--MLTIETSKKFDKDLKILVKNGFDLKLLYK-VVGNLATEQPLAPKYKDHPLKGGLKDFRECHLKPDLLLVYQIKKQTLFLVRLGSHSELF-
9	MUSTER	2otrA	0.375	0.957	4.368	threading_9	M--LTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQ-PLAPKYKDHPLKGGLKDFRECHLKPDLLLVYQIKENTLFLVRLGSHSELF-
10	SPARKS	3oeic	0.155	0.913	1.719	threading_10	V--RSVNFDPDAWEDFLFWLAADRKARRITRLIGEIQRDPFSGIGKP--EPLQGELSGYWSRRIDDEHRLVYRAGDDEVTMLKARYHY----

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.953 to 1z8mA SCOP code=d.298.1.2	TM-score=0.951 to 1z8mA SCOP code=d.298.1.2	TM-score=0.962 to 1z8mA SCOP code=d.298.1.2	TM-score=0.659 to 1z8mA SCOP code=d.298.1.2	TM-score=0.957 to 1z8mA SCOP code=d.298.1.2