Template-based Modeling Results for YAFP_ECOLI

Submitted Primary Sequence

>Length 150
MNNIQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQISAWAQIDESRWKEKLAKSQVWVAIINAQPVGFISRIEHYIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQTVKQQRVECRGAWFTNFYMRYKPQH
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNNIQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQISAWAQIDESRWKEKLAKSQVWVAIINAQPVGFISRIEHYIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQTVKQQRVECRGAWFTNFYMRYKPQH
CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCEEEEEEECCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEEEECCCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNNIQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQISAWAQIDESRWKEKLAKSQVWVAIINAQPVGFISRIEHYIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQTVKQQRVECRGAWFTNFYMRYKPQH
443120120222003200200120012102331122001101312321022313311000011231000000123120000000121143100100020013223101010122012003411020021221335112010000112466
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNNIQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQISAWAQIDESRWKEKLAKSQVWVAIINAQPVGFISRIEHYIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQTVKQQRVECRGAWFTNFYMRYKPQH
1	MUSTER	2fiwA	0.322	0.973	2.331	threading_1	VSTPALRPYLPEDAAVTAAIFVASIEQLTADDYSEEQQEAWASADEAKFAARLSGQLTLIATLQGVPVGFASLGPDHID-LYVHPDYVGRDVGTTLIDALEKLALILTVDASDNAAEFFAKRGYVAKQRNTVSINGEWLANTTTKSL---
2	SPARKS	2fiwa	0.306	0.980	3.024	threading_2	VSTPALRPYLPEDAAVTAAIFVASIEQLTADDYSEEQQEAWASDDEAKFAARLSGQLTLIATLQGVPVGFASLKGPDHIDLYVHPDYVGRDVGTTLIDALEKLALILTVDASDNAAEFFAKRGYVAKQRNTVSINGEWLANTTTKSL---
3	PROSPECT2	2fiwA	0.306	0.980	2.517	threading_3	VSTPALRPYLPEDAAVTAAIFVASIEQLTADDYSEEQQEAWASDDEAKFAARLSGQLTLIATLQGVPVGFASLKGPDHIDLYVHPDYVGRDVGTTLIDALEKLALILTVDASDNAAEFFAKRGYVAKQRNTVSINGEWLANTTTKSL---
4	PPA-I	2fiwA	0.306	0.980	3.294	threading_4	VSTPALRPYLPEDAAVTAAIFVASIEQLTADDYSEEQQEAWASADEAKFAARLSGQLTLIATLQGVPVGFASLKGPDHIDLYVHPDYVGRDVGTTLIDALEKLALILTVDASDNAAEFFAKRGYVAKQRNTVSINGEWLANTTTKSL---
5	HHPRED-l	2fiw_A	0.324	0.967	2.001	threading_5	-STPALRPYLPEDAAVTAAIFVASIEQLTADDYSEEQQEAWAADDEAKFAARLSGQLTLIATLQGVPVGFASLKPDHID-LYVHPDYVGRDVGTTLIDALEKLAGALTVDASDNAAEFFAKRGYVAKQRNTVSINGEWLANTT-TKSL--
6	HHPRED-g	2fiw_A	0.324	0.967	2.167	threading_6	-STPALRPYLPEDAAVTAAIFVASIEQLTADDYSEEQQEAWASDDEAKFAARLSGQLTLIATLQGVPVGFASLKPDHID-LYVHPDYVGRDVGTTLIDALEKLALILTVDASDNAAEFFAKRGYVAKQRNTVSINGEWLANTT-TKSL--
7	SP3	2fiwa	0.306	0.980	2.865	threading_7	VSTPALRPYLPEDAAVTAAIFVASIEQLTADDYSEEQQEAWASDDEAKFAARLSGQLTLIATLQGVPVGFASLKGPDHIDLYVHPDYVGRDVGTTLIDALEKLAGALTVDASDNAAEFFAKRGYVAKQRNTVSINGEWLANTTTKSL---
8	SAM-T99	2kcwA	0.271	0.933	2.481	threading_8	-MVISIRRSRHEEGEELVAIWCRSVDATHD-FLSAEYRTE----LEDLVRSFLPEAPLWVAVNEDQPVGFMLLSGQHMDALFIDPDVRGCGVGRVLVEHALSMAPELTTNVNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLNLAY----
9	MUSTER	2kcwA	0.273	0.953	2.301	threading_9	M-VISIRRSRHEEGEELVAIWCRSVDAT-HDFLSAEYRTELEDLVRSF----LPEAPLWVAVNRDQPVGFMLLSGQHMDALFIDPDVRGCGVGRVLVEHALSMAPELTTNVNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLNLAYVGA-
10	SPARKS	3fnca	0.158	0.973	2.810	threading_10	--DFHIRKATNSDAEAIQHVATTSWHHTYQDLIPSDVQDDFLKYNVETLHNRISATPFAVLEQADKVIGFANFEKGELAAFYLLPEVTQRGLGTELLEVGTLFVPLPFVNVNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNL--NH

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.940 to 2fiwA SCOP code=d.108.1.1	TM-score=0.940 to 2fiwA SCOP code=d.108.1.1	TM-score=0.940 to 2fiwA SCOP code=d.108.1.1	TM-score=0.942 to 2fiwA SCOP code=d.108.1.1	TM-score=0.943 to 2fiwA SCOP code=d.108.1.1