Template-based Modeling Results for DHSD_ECOLI

Submitted Primary Sequence

>Length 115
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
4220001112100100002000000000000000000001130113100000211001000000000000000000020001102010010001000000000000000100112
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
1	MUSTER	1nekD	1.000	0.983	4.912	threading_1	--SNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
2	SPARKS	1nekd	1.000	0.983	7.744	threading_2	--SNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
3	PROSPECT2	1nekd	1.000	0.983	2.158	threading_3	--SNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
4	PPA-I	1nekD	1.000	0.983	11.290	threading_4	--SNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
5	HHPRED-l	2wdq_D	1.000	0.904	6.709	threading_5	----------NGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWG-
6	HHPRED-g	2wdq_D	1.000	0.913	7.232	threading_6	----------NGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
7	SP3	1nekd	1.000	0.983	5.472	threading_7	--SNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
8	SAM-T99	1nekD	1.000	0.983	6.642	threading_8	--SNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
9	MUSTER	1nekC	0.188	0.974	1.504	threading_9	MIRNVKKLQTITAIASILHRVSGVITFVAVGILLWLLGTSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFETFEAGKRSAKISFVITVVLSLLAGVLVW---
10	SPARKS	1qlac	0.104	1.000	0.960	threading_10	FKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWETPDKTRANLKKLKTLMSAFLIVLGLLTFGAY

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.990 to 1nekD TM-score=0.998 to native SCOP code=f.21.2.2	TM-score=0.990 to 1nekD TM-score=0.998 to native SCOP code=f.21.2.2	TM-score=0.990 to 1nekD TM-score=0.998 to native SCOP code=f.21.2.2	TM-score=0.990 to 1nekD TM-score=0.998 to native SCOP code=f.21.2.2	TM-score=0.990 to 1nekD TM-score=0.998 to native SCOP code=f.21.2.2

Experimental Structure

Download 1nekD

SCOP code=f.21.2.2