Template-based Modeling Results for RL35_ECOLI

Submitted Primary Sequence

>Length 65
MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA
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--------10--------20--------30--------40--------50--------60

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA
CCCCCCCHHHHHEEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA
44424124101110221140102122022211124312311331232110140002101310224
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--------10--------20--------30--------40--------50--------60

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA
1	MUSTER	3df23	1.000	0.985	5.038	threading_1	-PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA
2	SPARKS	2j283	1.000	0.985	3.606	threading_2	-PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA
3	PROSPECT2	3pyo5	0.333	0.969	1.350	threading_3	-PKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKLLLPY-
4	PPA-I	3bbo5	0.452	0.954	9.065	threading_4	--KMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPY-
5	HHPRED-l	2zjr_3	0.286	0.969	5.694	threading_5	-PKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKLMLPR-
6	HHPRED-g	2j01_8	0.333	0.969	4.735	threading_6	-PKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKLLLPY-
7	SP3	2j283	1.000	0.985	3.575	threading_7	-PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA
8	SAM-T99	3df23	1.000	0.985	4.093	threading_8	-PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA
9	MUSTER	2hgu7	0.344	0.985	4.876	threading_9	MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKLLLPY-
10	SPARKS	1nkw3	0.286	0.969	1.662	threading_10	-PKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKLMLPR-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.976 to 3df23 TM-score=0.741 to native SCOP code=d.301.1.1	TM-score=0.923 to 2hgu7 TM-score=0.676 to native SCOP code=d.301.1.1	TM-score=0.945 to 2awb3 TM-score=0.716 to native SCOP code=d.301.1.1	TM-score=0.780 to 3df23 TM-score=0.681 to native SCOP code=d.301.1.1	TM-score=0.713 to 2hgu7 TM-score=0.639 to native SCOP code=d.301.1.1

Experimental Structure

Download 1vs63

SCOP code=d.301.1.1