Template-based Modeling Results for RL27_ECOLI

Submitted Primary Sequence

>Length 85
MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE
CCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCEEEEECCCEECCCCCEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEEC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE
5533322211422332313210012021110110100011200211201100003330000102010202132344321111213
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE
1	MUSTER	2hgqZ	0.595	0.988	4.356	threading_1	MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYVHVRPL
2	SPARKS	1nkwu	0.699	0.976	4.179	threading_2	-AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFISIEAA
3	PROSPECT2	3pyoW	0.560	0.882	1.645	threading_3	---------TKNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYVHVRPL
4	PPA-I	2hgqZ	0.595	0.988	6.465	threading_4	MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYVHVRPL
5	HHPRED-l	2zjr_T	0.707	0.965	5.981	threading_5	-AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFISIEA-
6	HHPRED-g	2zjr_T	0.699	0.976	5.069	threading_6	-AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFISIEAA
7	SP3	1nkwu	0.699	0.976	2.624	threading_7	-AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFISIEAA
8	SAM-T99	3bbxW	1.000	0.988	4.503	threading_8	-AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE
9	MUSTER	2zjrT	0.699	0.976	4.206	threading_9	-AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFISIEAA
10	SPARKS	2akka	0.212	0.776	0.778	threading_10	--------MSIEVRDCNGALL----ADGDNVSKGSSTVLKRGTMI---RGIRLTSEDEIEGRTDKIKGLVLRTEFLKKAGS----

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.714 to 2zjrT TM-score=0.368 to native SCOP code=b.84.4.1	TM-score=0.714 to 2zjrT TM-score=0.368 to native SCOP code=b.84.4.1	TM-score=0.866 to 1sm1U TM-score=0.682 to native SCOP code=i.1.1.2	TM-score=0.735 to 2qamW TM-score=0.364 to native SCOP code=b.84.4.1	TM-score=0.714 to 2zjrT TM-score=0.368 to native SCOP code=b.84.4.1

Experimental Structure

Download 1vs6W

SCOP code=b.84.4.1