Template-based Modeling Results for RL18_ECOLI

Submitted Primary Sequence

>Length 117
MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF
CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEECCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF
553322323301201331342310000012023000000001321100000012232113313221122001100310022025320210001221120101010002102421133
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF
1	MUSTER	2hgqR	0.445	0.940	3.764	threading_1	--RLTAYERRKFRVRNRIKRTGRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKL-----KGNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLEF
2	SPARKS	1p85m	1.000	0.966	4.059	threading_2	--KKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGL--
3	PROSPECT2	3pyoO	0.439	0.838	2.206	threading_3	KF----------RVRNRIKRTGRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRVKALAEGAREG----
4	PPA-I	2hgqR	0.445	0.940	4.440	threading_4	--RLTAYERRKFRVRNRIKRTGRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKL-----KGNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLEF
5	HHPRED-l	3bbo_Q	0.440	0.991	4.980	threading_5	KTRREDRTARHVRIRKKVEGTPRPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEEYSSSPTIEVAKKVGEVIASACLEKGITKVAFDRGGYPYHGRVKALADAAREKGLQ-
6	HHPRED-g	3bbo_Q	0.453	1.000	4.660	threading_6	KTRREDRTARHVRIRKKVEGTPRPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDSSPTIEVAKKVGEVIASACLEKGITKVAFDRGGYPYHGRVKALADAAREKGLQF
7	SP3	1p85m	1.000	0.966	4.470	threading_7	--KKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGL--
8	SAM-T99	3bboQ	0.466	0.991	4.750	threading_8	-TRREDRTARHVRIRKKVEGTERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSPTIEVAKKVGEVIASACLEKGITKVAFDRGGYPYHGRVKALADAAREKGLQF
9	MUSTER	2aw4O	1.000	1.000	3.689	threading_9	MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF
10	SPARKS	1ilya	0.478	0.769	3.592	threading_10	----------------------RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKL-----KGNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLEF

Predicted Tertiary Structure


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TM-score=0.954 to 2hgqR TM-score=0.686 to native SCOP code=c.55.4.1	TM-score=0.950 to 2hgqR TM-score=0.685 to native SCOP code=c.55.4.1	TM-score=0.699 to 2aw4O TM-score=0.699 to native SCOP code=c.55.4.1	TM-score=0.712 to 2hgqR TM-score=0.686 to native SCOP code=c.55.4.1	TM-score=0.954 to 2hgqR TM-score=0.686 to native SCOP code=c.55.4.1

Experimental Structure

Download 1vs6O

SCOP code=c.55.4.1