Template-based Modeling Results for RL11_ECOLI

Submitted Primary Sequence

>Length 142
MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED
CCCCEEEEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED
5442211101010101203111210120032101012002101210321342120000010123210100022010010022002133222333322002011210120011103302112031001100000312102023
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED
1	MUSTER	2aw4I	1.000	0.993	4.208	threading_1	-AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED
2	SPARKS	1mmsa	0.602	0.937	4.869	threading_2	-------QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV-
3	PROSPECT2	3bboK	0.543	0.986	3.370	threading_3	AAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KPGFVIPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDI-D
4	PPA-I	2aw4I	1.000	0.993	4.925	threading_4	-AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED
5	HHPRED-l	1mms_A	0.602	0.937	4.829	threading_5	-------QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKA-GMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV-
6	HHPRED-g	1mms_A	0.602	0.937	3.941	threading_6	-------QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV-
7	SP3	1mmsa	0.602	0.937	4.600	threading_7	-------QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV-
8	SAM-T99	2k3fA	0.617	0.993	4.493	threading_8	MAKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD
9	MUSTER	2k3fA	0.617	0.993	4.169	threading_9	MAKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADK-AGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD
10	SPARKS	1s1ik	0.240	0.908	4.459	threading_10	--------LYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEF-KGIKVTVQLKIQNRQAAASV--VPSASSLVITALKEPPRDRKKNVKHSGNIQLDEIIEIARQMRDKSFGRTLASVTKEILGTAQSVGCRV--

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.992 to 2aw4I TM-score=0.995 to native SCOP code=a.4.7.1	TM-score=0.462 to 1dubA TM-score=0.328 to native SCOP code=c.14.1.3	TM-score=0.947 to 2aw4I TM-score=0.950 to native SCOP code=a.4.7.1	TM-score=0.948 to 3bboK TM-score=0.932 to native SCOP code=i.1.1.1	TM-score=0.992 to 2aw4I TM-score=0.995 to native SCOP code=a.4.7.1

Experimental Structure

Download 1vs6I

SCOP code=a.4.7.1