Template-based Modeling Results for RCSF_ECOLI

Submitted Primary Sequence

>Length 134
MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK
54210100000001102122322232232223334232243423311202012323311222121101020221222332121202201310011013131200000101003323201210001010011337
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK
1	MUSTER	2y1bA	1.000	0.642	3.235	threading_1	----------------------------------------------TPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT--
2	SPARKS	2l8ya	0.990	0.784	4.391	threading_2	-----------------------------MAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK
3	PROSPECT2	2y1bA	1.000	0.642	1.907	threading_3	----------------------------------------------TPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT--
4	PPA-I	2y1bA	1.000	0.642	5.268	threading_4	----------------------------------------------TPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT--
5	HHPRED-l	2y1b_A	1.000	0.642	8.893	threading_5	----------------------------------------------TPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT--
6	HHPRED-g	2y1b_A	1.000	0.642	8.722	threading_6	----------------------------------------------TPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT--
7	SP3	2l8ya	0.990	0.784	4.253	threading_7	-----------------------------MAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK
8	SAM-T99	2y1bA	1.000	0.642	5.768	threading_8	----------------------------------------------TPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT--
9	MUSTER	1vr4A	0.222	0.604	0.864	threading_9	-------------------------------------------------MIVTTTSGIQGKEIEYIDIVNGEAIMGAVRDLFASRDIAMDEMKELAKQKGANAIVGVDVDYEVVRDG-MLMVAVSGTAVRI---
10	SPARKS	2y1ba	1.000	0.642	3.743	threading_10	----------------------------------------------TPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT--

Predicted Tertiary Structure


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TM-score=0.582 to 1vr4A TM-score=0.994 to native SCOP code=d.230.5.1	TM-score=0.582 to 1vr4A TM-score=0.994 to native SCOP code=d.230.5.1	TM-score=0.555 to 1vr4A TM-score=0.841 to native SCOP code=d.230.5.1	TM-score=0.582 to 1vr4A TM-score=0.994 to native SCOP code=d.230.5.1	TM-score=0.582 to 1vr4A TM-score=0.994 to native SCOP code=d.230.5.1

Experimental Structure

Download 2y1bA

SCOP code=d.230.5.1