Template-based Modeling Results for LPPY_ECOLI


  Submitted Primary Sequence

>Length 44
MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
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--------10--------20--------30--------40
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
CCEEEEEHHHHHHHCCCCCCEEEECCCCCCCCCCCCEECCCCCC
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--------10--------20--------30--------40
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
43100112101304332200000001212221230001022244
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--------10--------20--------30--------40
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
1MUSTER2ptaA0.3240.7731.102threading_1TISCTNPQCYPHCKKETGYP-------NAKCMNRKCK-CFG--R
2SPARKS2pspa10.3420.8641.047threading_2ACRC--SRQDPKNRVNCG----FPGITSDQCFTSGCCFVPGVPW
3PPA-I4caaB0.2260.7051.133threading_3IVRFNRPFLMIIVPTDTQNIFFMSKVTNPKQ-------------
4PPA-I2achB0.2190.7271.064threading_4IVRFNRPFLMIIVPTDTQNIFFMSKVTNPKQA------------
5MUSTER1fctA0.2190.7270.962threading_5MAMAMRSTFAARVGAK-------PAVRGARPASRMS--CMA---
6SPARKS1c4ea0.3450.6590.857threading_6--QCVK-------KDELCIPYY---LDCCEPLNWWDHKCIG---
7PROSPECT21fct_0.1880.7270.456threading_7MAMAMRSTFAARVGAK-------PAVRGARPASR-----MSCMA
8PPA-I2d2cE0.1670.6820.967threading_8--------------MILGAVFYIVFIALFFGIAVGIIFAIKSIK
9HHPRED-l2gvk_A0.2380.9550.816threading_9DLKIVRAN-PFTSKGEYGTYFTDRLLDFSTAITGTLFFVPSYD-
10HHPRED-g1f59_C0.2220.2050.913threading_10DD--------------------------SK---------PAFSG

  Predicted Tertiary Structure

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TM-score=0.625 to 2ptaA
SCOP code=g.3.7.2
TM-score=0.474 to 1pe31
SCOP code=g.16.1.1
TM-score=0.375 to 1maeH
SCOP code=b.69.2.1
TM-score=0.369 to 1maeH
SCOP code=b.69.2.1
TM-score=0.536 to 1fctA
SCOP code=j.36.1.1