Template-based Modeling Results for PPDD_ECOLI

Submitted Primary Sequence

>Length 146
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
55434122101000000000000000010022102100111002101101000110012222132021122101222223101101013010001022114211000000111340100001102342321013002311323334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
1	MUSTER	1ay2A	0.321	0.918	2.817	threading_1	-------TLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENSAGVASPPSDIKGKYVKEVEVKNGVVTATMLSSIKGKKLSLWARRE--NGSVKWFCGQPVTDTKHLPSTCRD--NFDAK-
2	SPARKS	2pil_	0.321	0.918	3.856	threading_2	------FTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPE-NNTSAGVAPDIKGKYVKEVEVKNGVVTATMLSSIKGKKLSLWARRE--NGSVKWFCGQPEIDTKHLPSTCRD--NFDAK-
3	PROSPECT2	3sokA	0.233	0.884	1.834	threading_3	------FTLIELMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRISDHLESGECKGDANPASGSLGNDDKGKYALATIDGDYKVVITYGQGIVGKKLVLDQF---VNGSYKYNEGETDLELKFIPNAV--------KN
4	PPA-I	1ay2A	0.301	0.932	4.718	threading_4	-------TLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENSAGVASPPSDIKGKYVKEVEVKNGVVTATMLSSGVNNEKKLSLWARRENGSVKWFCGQPEIDTKHLPSTCRDNFDAK---
5	HHPRED-l	3sok_A	0.222	0.863	4.900	threading_5	------FTLIELMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRISDHLEGEASGSL-GNDDKGKYALIDGDYNKDAKTNGCKVVITYGQKIVGKKLVLDQFVN---G--SYKYNEGDLELKFIPNAVKN--------
6	HHPRED-g	3sok_A	0.222	0.863	4.835	threading_6	------FTLIELMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRISDHLEGEASGSLGND-DKGKLATIDGDYNKDAKTNGCKVVITYGQKIVGKKLVLDQFVN---GS--YKYNEGDLELKFIPNAVKN--------
7	SP3	2pil_	0.319	0.925	3.700	threading_7	------FTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTAGVAPPSDIKGKYVKEVEVKNGVVTATMLSSIKGKKLSLWARRE--NGSVKWFCGQPVTDTKHLPSTCRD--NFDAK-
8	SAM-T99	1ay2A	0.322	0.788	4.210	threading_8	-------TLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNAGVASPPSDIKGKYVKEVEVKNGVVTATMLSSNEIKGKKLSLWARRENGSVKWFC------------------------
9	MUSTER	2hi2A	0.313	0.918	2.777	threading_9	-------TLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENSAGVASSPTDIKGKYVKEVEVKNGVVTATMLSSIKGKKLSLWARRE--NGSVKWFCGQPVTDTKHLPSTCRD--NFDAK-
10	SPARKS	3soka	0.233	0.884	3.554	threading_10	------FTLIELMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRISDHLESGECKGDANPASGSLGNDDKGKYALATIDKNGKVVITYGQGIVGKKLVLDQ---FVNGSYKYNEGETDLELKFIPNAVKN--------

Predicted Tertiary Structure


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TM-score=0.728 to 1ay2A SCOP code=d.24.1.1	TM-score=0.786 to 1ay2A SCOP code=d.24.1.1	TM-score=0.807 to 1ay2A SCOP code=d.24.1.1	TM-score=0.614 to 1ay2A SCOP code=d.24.1.1	TM-score=0.784 to 1ay2A SCOP code=d.24.1.1