Template-based Modeling Results for LDRD_ECOLI


  Submitted Primary Sequence

>Length 35
MTFAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
12345678901234567890123456789012345
--------10--------20--------30
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTFAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MTFAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
45012001010110000000000000012112534
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--------10--------20--------30
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMTFAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
1SPARKS1s5lx0.2060.9711.378threading_1IT-PSLKGFFIGLLSGAVVLGLTFAVLIAISQIDK
2PPA-I2l9uA0.2571.0001.162threading_2MGRTHLTMALTVIAGLVVIFMMLGGTFLYWRGRRH
3SP33dl8c0.1180.9711.059threading_3ATISVIIFSLAIGVYLWILDLTFTKIISFILSLR-
4SPARKS1jb0m0.2070.8291.295threading_4LTDTQVYVALVIALLPAVLAFRLSTELYK------
5PPA-I2hn8A0.1711.0001.155threading_5MPKQIVYWKQWLSLRNPILVFLKTRVLKRWRLFSK
6SP31s5lx0.2060.9711.022threading_6-TITSLKGFFIGLLSGAVVLGLTFAVLIAISQIDK
7SPARKS3dl8c0.1180.9711.167threading_7ATISVIIFSLAIGVYLWILDLTFTKIISFILSLR-
8PPA-I1s5lx0.1711.0001.141threading_8TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDK
9SPARKS1g2ya0.2140.8001.105threading_9SKLSQLQT----ELAALLESGLSKEALIQALG---
10PPA-I2latA0.1711.0001.018threading_10MITDVQLAIFANMLGVSLFLLVVLYHYVAVNNPKK

  Predicted Tertiary Structure

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TM-score=0.788 to 1et1A
SCOP code=j.15.1.1
TM-score=0.593 to 1r7gA
SCOP code=j.35.1.1
TM-score=0.696 to 1kv4A
SCOP code=j.4.1.3
TM-score=0.788 to 1kd9A
SCOP code=h.1.3.1
TM-score=0.661 to 2r2vA
SCOP code=h.1.3.1